EBG00000313325 - n.834T>C
Drug resistance types
88 Sensitive
11 RR-TB
13 HR-TB
20 MDR-TB
12 Pre-XDR-TB
1 XDR-TB
180 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 14 |
| lineage4.1.1.3 | 4 |
| lineage3.1 | 1 |
| lineage3 | 13 |
| lineage4.9 | 27 |
| lineage3.1.2.2 | 1 |
| lineage3.1.1 | 4 |
| lineage4.1.1.3.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1 | 117 |
| lineage4.3.4.1 | 2 |
| lineage4.1.2 | 2 |
| lineage1.1.1.1 | 1 |
| lineage4.2.1 | 3 |
| lineage4.8 | 10 |
| lineage4.3.2.1 | 11 |
| lineage4.4.1.1 | 5 |
| lineage4 | 3 |
| lineage2.2.1.1 | 3 |
| lineage4.1.1.2 | 2 |
| lineage4.3.3 | 10 |
| lineage1.1.3.2 | 4 |
| lineage4.1.1 | 9 |
| lineage4.4 | 1 |
| lineage4;lineage2.2.1 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage4.7 | 1 |
| lineage4.1.2;lineage3.1 | 2 |
| lineage2.2 | 2 |
| lineage4.3 | 1 |
| lineage5.1.1 | 1 |
| La1.8.1 | 17 |
| lineage6.3.1 | 3 |
| 4 | |
| lineage4.1.4 | 1 |
| lineage4.9;La1.8 | 2 |
| lineage4;La1.8.1 | 1 |
| lineage6 | 3 |
| lineage6.1.1 | 2 |
| La1.2 | 2 |
| La1.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage2.1 | 1 |
| La1.6 | 2 |
| lineage4.3.2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage1.1 | 1 |
| La1.4 | 1 |
| lineage1.1.2 | 2 |
| lineage3.1.2 | 1 |
| La1.7.1 | 2 |
| lineage4.4.2 | 3 |
| lineage4.6.4 | 2 |
| lineage4.2 | 1 |
| lineage4.6 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.1.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 325 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6046113 | Other | lineage4.1.1.3 | None | SRR6045778 | Other | lineage3.1 | None | SRR6044817 | Other | lineage3 | None | SRR6045928 | Other | lineage4.9 | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6046481 | Other | lineage4.1.1.3.1 | None | SRR6045321 | Other | lineage1.1.3.1 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR3148213 | Pre-XDR-TB | lineage4.3.4.1 | mx | SRR6045384 | Other | lineage4.1.2 | None | SRR6046420 | Other | lineage3 | None | ERR4828559 | Other | lineage1.1.1.1 | None | ERR4872272 | Pre-XDR-TB | lineage4.2.1 | None | SRR6046641 | Other | lineage4.8 | None | ERR3077968 | MDR-TB | lineage4.1.2.1 | None | SRR6046767 | RR-TB | lineage2.2.1 | None | SRR6982092 | Other | lineage4.3.2.1 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | SRR6856087 | Sensitive | lineage4 | None | SRR6982102 | Other | lineage2.2.1 | None | SRR6856119 | Sensitive | lineage2.2.1 | None | SRR6896162 | Sensitive | lineage4.9 | None | SRR6982139 | Sensitive | lineage4.9 | None | SRR6982105 | Sensitive | lineage2.2.1.1 | None | SRR6982414 | Sensitive | lineage4.9 | None | SRR6982180 | Sensitive | lineage4.1.1.2 | None | SRR6896255 | Sensitive | lineage4.3.3 | None | SRR6982175 | Other | lineage1.1.3.2 | None | SRR6982419 | Other | lineage4.8 | None | SRR6982427 | Sensitive | lineage4.1.1 | None | SRR6982190 | Sensitive | lineage4.3.3 | None | SRR6982195 | RR-TB | lineage4.4 | None | SRR6982229 | Sensitive | lineage2.2.1 | None | SRR6982227 | Other | lineage4.1.1 | None | SRR6982328 | HR-TB | lineage3.1.1 | None | SRR6896577 | Sensitive | lineage4.8 | None | SRR6982448 | Sensitive | lineage4;lineage2.2.1 | None | SRR6855721 | Sensitive | lineage4.3.2.1 | None | SRR6807688 | Pre-XDR-TB | lineage4.2.1 | None | SRR6981941 | Sensitive | lineage4.3.4.2.1 | None | SRR6981922 | Sensitive | lineage4.3.2.1 | None | SRR6981939 | Sensitive | lineage4.3.4.2.1 | None | SRR6982363 | Sensitive | lineage4.3.3 | None | SRR6855768 | Other | lineage4.3.2.1 | None | SRR6981948 | Sensitive | lineage4.3.2.1 | None | SRR6982022 | Sensitive | lineage4.4.1.1 | None | SRR6982371 | Sensitive | lineage4.1.1 | None | SRR6981977 | Sensitive | lineage2.2.1 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | SRR6981975 | Sensitive | lineage4.7 | None | SRR6981997 | Sensitive | lineage4.9 | None | SRR6982011 | Other | lineage4.1.1 | None | SRR6982014 | Other | lineage4.1.1 | None | SRR6982389 | Other | lineage4.1.2;lineage3.1 | None | SRR6982037 | Sensitive | lineage4.1.1 | None | SRR6982035 | Sensitive | lineage4.9 | None | SRR6982033 | Sensitive | lineage2.2.1 | None | SRR6824624 | Sensitive | lineage2.2.1 | None | SRR6982398 | MDR-TB | lineage2.2 | None | SRR6855963 | RR-TB | lineage2.2.1 | None | SRR6982048 | HR-TB | lineage4.3.2.1 | None | SRR6982075 | Sensitive | lineage3 | None | SRR6982056 | Sensitive | lineage4.3.4.2.1 | None | SRR6982484 | Sensitive | lineage3.1.1 | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR6982057 | Pre-XDR-TB | lineage4.3 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | ERR5162108 | Other | La1.8.1 | None | ERR5162118 | Other | La1.8.1 | None | ERR5311080 | Other | La1.8.1 | None | ERR5162133 | Other | La1.8.1 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | SRR6982514 | Sensitive | lineage4.3.3 | None | SRR8217919 | HR-TB | lineage2.2.1 | None | ERR3283048 | HR-TB | lineage4.9 | None | SRR7131294 | Other | lineage6.3.1 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283028 | Other | None | ERR3283041 | Other | lineage4.9 | None | ERR3324328 | MDR-TB | lineage2.2.1 | None | ERR3283053 | Other | lineage4.9 | None | ERR3324347 | Sensitive | lineage4.1.2.1 | None | ERR3324331 | MDR-TB | lineage4.3.4.1 | None | ERR3324355 | HR-TB | lineage4.1.1.3 | None | ERR3324351 | MDR-TB | lineage4.1.4 | None | ERR3324362 | HR-TB | lineage4.1.2.1 | None | ERR3324354 | Sensitive | lineage4.8 | None | ERR3324373 | MDR-TB | lineage2.2.1 | None | ERR3324375 | Other | lineage1.1.3.2 | None | ERR3797071 | Other | lineage4.9 | None | ERR3439225 | Other | La1.8.1 | None | ERR3797035 | Other | lineage4.9 | None | ERR3439279 | Other | lineage4.9;La1.8 | None | ERR4188033 | Other | lineage4;La1.8.1 | None | ERR3804115 | Sensitive | lineage6 | None | ERR4187604 | RR-TB | La1.8.1 | None | ERR4188010 | Other | La1.8.1 | None | ERR3804142 | Sensitive | lineage6.3.1 | None | ERR4188158 | Other | lineage4.9 | None | ERR4188035 | Other | La1.8.1 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR4188253 | Other | La1.8.1 | None | ERR4188255 | Other | lineage4.9;La1.8 | None | ERR4769424 | Sensitive | lineage4.9 | None | ERR4627379 | Other | La1.8.1 | None | ERR4188369 | Other | La1.8.1 | None | ERR4192550 | Other | lineage6.1.1 | None | ERR4627392 | Other | La1.8.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769503 | Other | La1.2 | None | ERR4769505 | Other | lineage4.9 | None | ERR4769507 | Sensitive | lineage4.9 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR4772230 | Other | La1.2 | None | ERR4769546 | Other | La1.3 | None | ERR4769525 | Sensitive | lineage4.9 | None | ERR5865118 | MDR-TB | lineage2.2.1 | None | ERR4800111 | Sensitive | lineage3.1.2.1 | None | ERR5864322 | MDR-TB | lineage4.2.1 | None | ERR5987345 | Pre-XDR-TB | lineage2.2.1 | None | ERR6866714 | Sensitive | lineage2.2.1 | None | ERR6866186 | Sensitive | lineage4.8 | None | ERR6197036 | Other | lineage4 | None | ERR6866872 | Other | lineage4.1.1 | None | ERR9787164 | Sensitive | lineage6.1.1 | None | ERR7801314 | Sensitive | lineage4.3.4.2 | None | ERR7801321 | Sensitive | lineage4.3.4.2.1 | None | SRR11662417 | Pre-XDR-TB | lineage2.1 | None | ERR8025347 | Sensitive | lineage4.9 | None | ERR9117681 | Other | lineage4.3.3 | None | ERR9786498 | Sensitive | lineage4.1.2.1 | None | ERR9786543 | Sensitive | lineage4.1.2.1 | None | ERR9787167 | Sensitive | lineage6.3.1 | None | ERR9787173 | Sensitive | lineage6 | None | SRR10482944 | Other | La1.8.1 | None | ERR9787364 | Sensitive | lineage6 | None | SRR10315554 | XDR-TB | lineage4.3.3 | None | SRR10993956 | Other | La1.6 | None | SRR10993936 | Other | La1.6 | None | SRR10808496 | Sensitive | lineage4.3.2 | None | SRR10869086 | Pre-XDR-TB | lineage2.2.2 | None | SRR10869268 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR13423641 | MDR-TB | lineage2.2.1 | None | SRR11972188 | MDR-TB | lineage2.2.1 | None | SRR11972407 | Pre-XDR-TB | lineage2.2.1 | None | SRR12931719 | Other | lineage4.3.4.2 | None | SRR13423629 | MDR-TB | lineage2.2.1 | None | SRR11241401 | MDR-TB | lineage4.3.3 | None | SRR11972227 | Pre-XDR-TB | lineage2.2.1 | None | SRR12199400 | HR-TB | lineage4.9;lineage1.1 | None | SRR12199472 | Sensitive | lineage1.1 | None | SRR15723110 | Sensitive | lineage2.2.1 | None | SRR15368914 | MDR-TB | lineage2.2.1 | None | SRR16295737 | Other | lineage2.2.1 | None | SRR16295740 | Other | lineage2.2.1 | None | SRR16278292 | Other | La1.4 | None | SRR16295744 | Other | lineage2.2.1 | None | SRR16295741 | Other | lineage2.2.1 | None | SRR16295745 | Other | lineage2.2.1 | None | SRR16295743 | Other | lineage2.2.1 | None | SRR16295742 | Other | lineage2.2.1 | None | SRR16295750 | Other | lineage2.2.1 | None | SRR16295746 | Other | lineage2.2.1 | None | SRR16295748 | Other | lineage2.2.1 | None | SRR16295747 | Other | lineage2.2.1 | None | SRR16295749 | Other | lineage2.2.1 | None | SRR16295751 | Other | lineage2.2.1 | None | SRR16295754 | Other | lineage2.2.1 | None | SRR16295753 | Other | lineage2.2.1 | None | SRR16295752 | Other | lineage2.2.1 | None | SRR16295755 | Other | lineage2.2.1 | None | SRR16295763 | Other | lineage2.2.1 | None | SRR16295756 | Other | lineage2.2.1 | None | SRR16295757 | Other | lineage2.2.1 | None | SRR16295758 | Other | lineage2.2.1 | None | SRR16295760 | Other | lineage2.2.1 | None | SRR16295765 | Other | lineage2.2.1 | None | SRR16295761 | Other | lineage2.2.1 | None | SRR16295762 | Other | lineage2.2.1 | None | SRR16295771 | Other | lineage2.2.1 | None | SRR16295764 | Other | lineage2.2.1 | None | SRR16295766 | Other | lineage2.2.1 | None | SRR16295738 | Other | lineage2.2.1 | None | SRR16295770 | Other | lineage2.2.1 | None | SRR16295767 | Other | lineage2.2.1 | None | SRR16295773 | Other | lineage2.2.1 | None | SRR16295769 | Other | lineage2.2.1 | None | SRR16295768 | Other | lineage2.2.1 | None | SRR16295775 | Other | lineage2.2.1 | None | SRR16295777 | Other | lineage2.2.1 | None | SRR16295772 | Other | lineage2.2.1 | None | SRR16295739 | Other | lineage2.2.1 | None | SRR16295782 | Other | lineage2.2.1 | None | SRR16295785 | Other | lineage2.2.1 | None | SRR16295776 | Other | lineage2.2.1 | None | SRR16295786 | Other | lineage2.2.1 | None | SRR16295783 | Other | lineage2.2.1 | None | SRR16295734 | Other | lineage2.2.1 | None | SRR16295784 | Other | lineage2.2.1 | None | SRR16295774 | Other | lineage2.2.1 | None | SRR16295788 | Other | lineage2.2.1 | None | SRR16295790 | Other | lineage2.2.1 | None | SRR16295780 | Other | lineage2.2.1 | None | SRR16295791 | Other | lineage2.2.1 | None | SRR16295789 | Other | lineage2.2.1 | None | SRR16295792 | Other | lineage2.2.1 | None | SRR16295801 | Other | lineage2.2.1 | None | SRR16295787 | Other | lineage2.2.1 | None | SRR16295797 | Other | lineage2.2.1 | None | SRR16295799 | Other | lineage2.2.1 | None | SRR16295804 | Other | lineage2.2.1 | None | SRR16295793 | Other | lineage2.2.1 | None | SRR16295808 | Other | lineage2.2.1 | None | SRR16295807 | Other | lineage2.2.1 | None | SRR16295798 | Other | lineage2.2.1 | None | SRR16295794 | Other | lineage2.2.1 | None | SRR16295811 | Other | lineage2.2.1 | None | SRR16295805 | Other | lineage2.2.1 | None | SRR16295809 | Other | lineage2.2.1 | None | SRR16295816 | Other | lineage2.2.1 | None | SRR16295810 | Other | lineage2.2.1 | None | SRR16295806 | Other | lineage2.2.1 | None | SRR16295817 | Other | lineage2.2.1 | None | SRR16295802 | Other | lineage2.2.1 | None | SRR16295819 | Other | lineage2.2.1 | None | SRR16295812 | Other | lineage2.2.1 | None | SRR16295813 | Other | lineage2.2.1 | None | SRR16295822 | Other | lineage2.2.1 | None | SRR16295829 | Other | lineage2.2.1 | None | SRR16295826 | Other | lineage2.2.1 | None | SRR16295820 | Other | lineage2.2.1 | None | SRR16295831 | Other | lineage2.2.1 | None | SRR16295830 | Other | lineage2.2.1 | None | SRR16295825 | Other | lineage2.2.1 | None | SRR16295824 | Other | lineage2.2.1 | None | SRR16295814 | Other | lineage2.2.1 | None | SRR16627757 | Sensitive | lineage3 | None | SRR16295815 | Sensitive | lineage2.2.1 | None | SRR16295821 | Other | lineage2.2.1 | None | SRR16295828 | Other | lineage2.2.1 | None | SRR1792359 | Other | La1.8.1 | None | SRR17406743 | HR-TB | lineage1.1.2 | None | SRR1791899 | HR-TB | La1.8.1 | None | SRR17856664 | Sensitive | lineage3 | None | SRR1792267 | Other | La1.8.1 | None | SRR18002907 | MDR-TB | lineage2.2.1 | None | SRR18149443 | Sensitive | lineage3 | None | SRR18149430 | Sensitive | lineage4.1.1.3 | None | SRR18149455 | Sensitive | lineage4.1.2.1 | None | SRR18213800 | Other | lineage3.1.2 | None | SRR18391683 | Other | La1.7.1 | None | SRR18391772 | Other | La1.7.1 | None | SRR19303808 | Sensitive | lineage4.1.2.1 | None | SRR18911000 | Sensitive | lineage2.2.1 | None | SRR2101540 | Sensitive | lineage4.3.2.1 | None | SRR19576436 | Sensitive | None | SRR2101087 | Other | lineage4.4.2 | None | SRR2101353 | Sensitive | lineage4.8 | None | SRR2101617 | Other | lineage4.1.1 | None | SRR2101595 | RR-TB | lineage4.3.4.2.1 | None | SRR2101625 | Other | lineage4.1.2;lineage3.1 | None | SRR2101666 | Sensitive | lineage4.8 | None | SRR2101647 | Sensitive | lineage4.9 | None | SRR2101637 | RR-TB | lineage4.4.1.1 | None | SRR2101663 | Other | lineage1.1.3.2 | None | SRR2101685 | Sensitive | lineage4.9 | None | SRR21240038 | Other | lineage4.1.2.1 | None | SRR2101774 | Sensitive | lineage2.2.1 | None | SRR2101827 | Sensitive | lineage4.3.4.2.1 | None | SRR2101802 | Sensitive | lineage4.4.1.1 | None | SRR2101816 | Other | lineage4.8 | None | SRR21240093 | Other | lineage4.1.2.1 | None | SRR21676318 | Sensitive | lineage2.2.1 | None | SRR21240141 | Other | lineage4.3.3 | None | ERR3276300 | Pre-XDR-TB | lineage2.2.1 | None | SRR21714038 | Sensitive | lineage4.3.3 | None | SRR22424905 | RR-TB | lineage4.9 | None | SRR21714045 | HR-TB | lineage2.2.1 | None | SRR21764250 | Other | lineage4.9 | None | SRR27450209 | Sensitive | lineage4.4.2 | None | SRR8692842 | Other | lineage4.9 | None | SRR6824519 | MDR-TB | lineage2.2.1 | cn | SRR27450266 | Sensitive | lineage4.4.2 | None | ERR4815103 | Other | lineage3 | None | ERR1679641 | Other | lineage4.6.4 | None | ERR1665402 | MDR-TB | lineage2.2.1 | None | SRR8380862 | MDR-TB | lineage2.2.1.1 | in | SRR5485503 | MDR-TB | None | ERR2027273 | Sensitive | lineage4.4.1.1 | None | ERR4815898 | Other | lineage3 | None | ERR4815948 | Other | lineage4.8 | None | SRR3675273 | Sensitive | lineage3 | None | SRR3675447 | Other | lineage3 | None | ERR4816231 | Other | lineage4 | None | SRR3675566 | Sensitive | lineage4.1.2.1 | None | ERR4816489 | Sensitive | lineage4.6.4 | None | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4816627 | Other | lineage2.2 | None | ERR4816756 | RR-TB | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818952 | Other | lineage3 | None | ERR4818261 | Other | lineage1.1.2 | None | SRR5067459 | HR-TB | lineage4.2 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | ERR4817266 | Other | lineage3 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR2515721 | Sensitive | lineage4.3.2.1 | None | SRR5007186 | Other | lineage4.6 | None | ERR4819217 | Other | lineage1.2.2.2 | None | SRR2101498 | Sensitive | lineage4.1.1.2 | None | ERR4817555 | RR-TB | lineage3 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR2515854 | Sensitive | lineage2.2.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045480 | Other | lineage4.1.1 | None | SRR2101636 | Other | lineage4.3.2.1 | None | ERR4820122 | Other | lineage4.3.1.1 | None | ERR2515148 | Sensitive | lineage4.3.3 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR2660524 | HR-TB | lineage1.1.3.2 | None | ERR4822035 | Other | lineage4.8 | None |
|---|
