Run ID: SRR16627757
Sample name:
Date: 03-04-2023 17:45:45
Number of reads: 3213358
Percentage reads mapped: 91.87
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.99 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.98 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.99 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpS5 | 779515 | c.-610C>T | upstream_gene_variant | 0.96 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472591 | n.746G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472669 | n.824_825insTAGA | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472678 | n.833T>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472679 | n.834T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472682 | n.839_843delGGGAT | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472701 | n.856T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.95 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.99 |
Rv1979c | 2221732 | p.Pro478Gln | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 0.98 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.97 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.99 |
clpC1 | 4040062 | p.Ile215Val | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 0.97 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244093 | c.861C>G | synonymous_variant | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.99 |