TB-Profiler result

Run: ERR4769506
Summary

Run ID: ERR4769506

Sample name:

Date: 01-04-2023 06:43:05

Number of reads: 92973

Percentage reads mapped: 6.28

Strain: La1.3

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1.3 M.bovis None None 0.15
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8792 c.1491G>C synonymous_variant 0.5
gyrA 8801 c.1500G>C synonymous_variant 0.5
gyrA 8818 p.Ser506Asn missense_variant 0.4
gyrA 8829 c.1528T>C synonymous_variant 0.4
gyrA 8843 c.1542G>A synonymous_variant 0.4
gyrA 8852 c.1551T>C synonymous_variant 0.4
gyrA 8858 c.1557T>G synonymous_variant 0.33
gyrA 8867 c.1566A>G synonymous_variant 0.33
gyrA 8870 c.1569G>C synonymous_variant 0.33
gyrA 8873 c.1572A>T synonymous_variant 0.33
gyrA 8897 c.1596T>C synonymous_variant 0.33
gyrA 8903 c.1602T>C synonymous_variant 0.4
gyrA 8907 c.1606_1608delAGCinsTCG synonymous_variant 0.4
gyrA 8915 c.1614A>G synonymous_variant 0.4
gyrA 8933 c.1632G>T synonymous_variant 0.5
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 760235 c.429T>C synonymous_variant 0.25
rpoB 760244 c.438G>C synonymous_variant 0.29
rpoB 760661 c.855A>G synonymous_variant 0.67
rpoB 760670 c.864G>C synonymous_variant 0.67
rpoB 760674 c.868T>C synonymous_variant 0.67
rpoB 760679 c.873A>G synonymous_variant 0.67
rpoB 760683 c.877T>C synonymous_variant 0.67
rpoB 760724 c.918T>C synonymous_variant 0.67
rpoB 760730 c.924T>C synonymous_variant 0.67
rpoB 762086 c.2280G>C synonymous_variant 1.0
rpoB 762114 p.Ile770Val missense_variant 1.0
rpoC 762929 c.-441G>T upstream_gene_variant 0.67
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.25
rpoC 764029 p.Glu220Asp missense_variant 0.25
rpoC 764032 p.Asp221Glu missense_variant 0.25
rpoC 764040 p.Ser224Thr missense_variant 0.29
rpoC 764044 c.675T>C synonymous_variant 0.33
rpoC 764071 c.702G>C synonymous_variant 0.29
rpoC 764083 c.714A>G synonymous_variant 0.29
rpoC 764085 p.Asn239Ile missense_variant 0.29
rpoC 764098 c.729A>G synonymous_variant 0.25
rpoC 764320 c.951C>T synonymous_variant 0.5
rpoC 764353 c.984G>T synonymous_variant 0.67
rpoC 764365 c.996C>T synonymous_variant 1.0
rpoC 764368 c.999C>A synonymous_variant 0.67
rpoC 764371 c.1002G>T synonymous_variant 0.67
rpoC 764377 c.1008C>G synonymous_variant 0.67
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764410 c.1041G>C synonymous_variant 0.67
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 1.0
rpoC 764446 c.1077T>C synonymous_variant 1.0
rpoC 764449 c.1080G>C synonymous_variant 1.0
rpoC 764455 c.1086G>T synonymous_variant 1.0
rpoC 764458 c.1089G>C synonymous_variant 1.0
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764500 c.1131C>G synonymous_variant 1.0
rpoC 764503 c.1134G>C synonymous_variant 1.0
rpoC 764509 c.1140G>C synonymous_variant 1.0
rpoC 764521 c.1152T>C synonymous_variant 1.0
rpoC 764524 c.1155C>T synonymous_variant 1.0
rpoC 764527 c.1158C>T synonymous_variant 1.0
rpoC 764530 c.1161C>T synonymous_variant 1.0
rpoC 764533 c.1164C>A synonymous_variant 1.0
rpoC 764536 c.1167G>T synonymous_variant 1.0
rpoC 764539 c.1170C>G synonymous_variant 1.0
rpoC 764548 c.1179G>A synonymous_variant 1.0
rpoC 764554 c.1185C>T synonymous_variant 1.0
rpoC 764560 c.1191T>C synonymous_variant 0.67
rpoC 764566 c.1197C>G synonymous_variant 0.67
rpoC 764572 c.1203G>C synonymous_variant 0.67
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.67
rpoC 764605 c.1236G>C synonymous_variant 0.29
rpoC 764611 c.1242G>T synonymous_variant 0.57
rpoC 764623 c.1254C>G synonymous_variant 0.25
rpoC 764632 c.1263T>C synonymous_variant 0.57
rpoC 764650 c.1281G>T synonymous_variant 0.57
rpoC 764653 c.1284G>C synonymous_variant 0.25
rpoC 764659 c.1290C>T synonymous_variant 0.25
rpoC 764662 c.1293G>C synonymous_variant 0.25
rpoC 764668 c.1299C>T synonymous_variant 0.25
rpoC 764701 c.1332C>G synonymous_variant 0.25
rpoC 764716 c.1347G>C synonymous_variant 0.33
rpoC 764935 c.1566T>C synonymous_variant 0.4
rpoC 764948 c.1579T>C synonymous_variant 0.33
rpoC 764953 c.1584G>C synonymous_variant 0.4
rpoC 764968 c.1599T>C synonymous_variant 0.4
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800612 c.-197A>G upstream_gene_variant 0.57
rplC 800618 c.-191T>C upstream_gene_variant 0.57
rplC 800633 c.-176T>C upstream_gene_variant 0.43
rplC 800654 c.-155T>C upstream_gene_variant 0.5
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
atpE 1461113 c.69C>T synonymous_variant 0.5
atpE 1461132 p.Val30Ile missense_variant 0.4
atpE 1461149 c.105T>G synonymous_variant 0.4
atpE 1461153 p.Ser37Ala missense_variant 0.4
atpE 1461159 p.Val39Ile missense_variant 0.4
atpE 1461167 c.123G>C synonymous_variant 0.33
atpE 1461170 c.126A>G synonymous_variant 0.33
atpE 1461179 c.135G>C synonymous_variant 0.33
atpE 1461182 c.138A>G synonymous_variant 0.33
atpE 1461185 c.141G>T synonymous_variant 0.33
atpE 1461188 c.144G>C synonymous_variant 0.33
atpE 1461197 c.153A>G synonymous_variant 0.33
atpE 1461212 c.168C>G synonymous_variant 0.4
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.62
rrs 1472085 n.240C>G non_coding_transcript_exon_variant 0.62
rrs 1472086 n.241T>C non_coding_transcript_exon_variant 0.62
rrs 1472089 n.244C>T non_coding_transcript_exon_variant 0.62
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.62
rrs 1472101 n.256G>A non_coding_transcript_exon_variant 0.62
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.62
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.82
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.64
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.58
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.62
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.57
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.82
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.88
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.61
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.82
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.69
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.67
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.69
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.62
rrs 1472222 n.377G>A non_coding_transcript_exon_variant 0.33
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.9
rrs 1472229 n.384C>T non_coding_transcript_exon_variant 0.33
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.22
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.33
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.33
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.88
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.25
rrs 1472256 n.411T>G non_coding_transcript_exon_variant 0.29
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.29
rrs 1472271 n.426T>C non_coding_transcript_exon_variant 0.25
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.75
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.75
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.75
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.75
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.75
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.75
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.75
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.75
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.75
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.5
rrs 1472501 n.656G>A non_coding_transcript_exon_variant 0.57
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.89
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.91
rrs 1472518 n.673G>C non_coding_transcript_exon_variant 0.91
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.95
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.95
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.95
rrs 1472544 n.699C>G non_coding_transcript_exon_variant 0.98
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.98
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 1.0
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 1.0
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 1.0
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 1.0
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 1.0
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.98
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.93
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.93
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.97
rrs 1472689 n.844C>G non_coding_transcript_exon_variant 0.87
rrs 1472690 n.845_846insCCGTA non_coding_transcript_exon_variant 0.87
rrs 1472697 n.852T>A non_coding_transcript_exon_variant 0.9
rrs 1472700 n.855C>T non_coding_transcript_exon_variant 0.87
rrs 1472705 n.860G>A non_coding_transcript_exon_variant 0.89
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.98
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.9
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.88
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.76
rrs 1472779 n.934G>A non_coding_transcript_exon_variant 0.4
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.4
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.67
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.67
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.67
rrs 1472856 n.1012_1015delAGGC non_coding_transcript_exon_variant 0.67
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.67
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.67
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.67
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.67
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.6
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.25
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.29
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.29
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.29
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.38
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.5
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.33
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.36
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.4
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.33
rrs 1473080 n.1235C>A non_coding_transcript_exon_variant 0.58
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.58
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.33
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.31
rrs 1473094 n.1249T>A non_coding_transcript_exon_variant 0.62
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.89
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.46
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.31
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.92
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.33
rrs 1473115 n.1270G>C non_coding_transcript_exon_variant 0.58
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.92
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.58
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.92
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.33
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.58
rrs 1473131 n.1286G>T non_coding_transcript_exon_variant 0.58
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.56
rrs 1473147 n.1302G>C non_coding_transcript_exon_variant 0.62
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.62
rrs 1473150 n.1305T>G non_coding_transcript_exon_variant 0.62
rrs 1473161 n.1316A>C non_coding_transcript_exon_variant 0.62
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.62
rrs 1473164 n.1319C>G non_coding_transcript_exon_variant 0.62
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.62
rrs 1473172 n.1327T>C non_coding_transcript_exon_variant 0.56
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.56
rrs 1473179 n.1334C>T non_coding_transcript_exon_variant 0.56
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.75
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.71
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.67
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.67
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.75
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.67
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.67
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.67
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.67
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.88
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.8
rrl 1473814 n.157A>G non_coding_transcript_exon_variant 0.71
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 0.71
rrl 1473830 n.173T>C non_coding_transcript_exon_variant 0.83
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.71
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.83
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.62
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.5
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.6
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.83
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.67
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.67
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.67
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.67
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474153 n.496C>T non_coding_transcript_exon_variant 1.0
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 1.0
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.8
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.8
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.8
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.8
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.67
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.6
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.4
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.67
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 1.0
rrl 1474414 n.757C>T non_coding_transcript_exon_variant 1.0
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 1.0
rrl 1474450 n.793T>C non_coding_transcript_exon_variant 1.0
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 1.0
rrl 1474482 n.825G>T non_coding_transcript_exon_variant 0.25
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.38
rrl 1474494 n.837C>G non_coding_transcript_exon_variant 0.5
rrl 1474495 n.838G>T non_coding_transcript_exon_variant 0.5
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.44
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.5
rrl 1474503 n.846G>C non_coding_transcript_exon_variant 0.5
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.44
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.44
rrl 1474508 n.851C>A non_coding_transcript_exon_variant 0.5
rrl 1474509 n.852G>C non_coding_transcript_exon_variant 0.5
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.33
rrl 1474527 n.870T>G non_coding_transcript_exon_variant 0.45
rrl 1474528 n.871T>C non_coding_transcript_exon_variant 0.45
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.55
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.82
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.55
rrl 1474542 n.885A>C non_coding_transcript_exon_variant 0.45
rrl 1474552 n.895C>G non_coding_transcript_exon_variant 0.71
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.67
rrl 1474570 n.913G>T non_coding_transcript_exon_variant 0.4
rrl 1474578 n.921A>G non_coding_transcript_exon_variant 0.4
rrl 1474584 n.927C>G non_coding_transcript_exon_variant 0.4
rrl 1474586 n.929T>A non_coding_transcript_exon_variant 0.4
rrl 1474587 n.930G>A non_coding_transcript_exon_variant 0.4
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.4
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.75
rrl 1474714 n.1058delT non_coding_transcript_exon_variant 0.75
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.5
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.4
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.4
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.6
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.71
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.5
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.57
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.67
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.5
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.67
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.62
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.25
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.38
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.6
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.38
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.44
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.5
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.5
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.43
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.5
rrl 1474945 n.1288C>T non_coding_transcript_exon_variant 0.67
rrl 1475129 n.1472G>T non_coding_transcript_exon_variant 0.33
rrl 1475144 n.1487G>C non_coding_transcript_exon_variant 0.4
rrl 1475154 n.1497C>A non_coding_transcript_exon_variant 0.43
rrl 1475163 n.1506T>G non_coding_transcript_exon_variant 0.5
rrl 1475175 n.1518G>A non_coding_transcript_exon_variant 0.43
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.38
rrl 1475707 n.2050T>A non_coding_transcript_exon_variant 0.18
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.18
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.18
rrl 1475722 n.2065G>A non_coding_transcript_exon_variant 0.22
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.38
rrl 1475752 n.2095C>G non_coding_transcript_exon_variant 0.25
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.86
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.29
rrl 1475761 n.2104C>T non_coding_transcript_exon_variant 0.43
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.86
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 0.57
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.67
rrl 1475767 n.2110G>A non_coding_transcript_exon_variant 0.43
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.6
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.78
rrl 1475776 n.2119G>C non_coding_transcript_exon_variant 0.22
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.33
rrl 1475783 n.2126T>G non_coding_transcript_exon_variant 0.22
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.31
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.31
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.29
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.29
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.73
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.67
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.75
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.5
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.54
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.64
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.5
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.5
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.57
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.57
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.57
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.57
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.57
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.57
rrl 1476080 n.2423T>A non_coding_transcript_exon_variant 0.58
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.5
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.5
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.5
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.5
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.62
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.5
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.5
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.6
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.4
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.55
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.58
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.17
rrl 1476164 n.2507A>C non_coding_transcript_exon_variant 0.56
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.54
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.82
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.61
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.61
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.83
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.86
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.64
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.67
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.67
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.7
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.74
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.96
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.15
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.85
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.88
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.93
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.99
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.96
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.95
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.95
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.95
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.99
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.93
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.94
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.94
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.94
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.94
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.92
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.91
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.92
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.92
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.91
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.9
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.88
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.95
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.91
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.91
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.89
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.9
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.94
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.89
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.9
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.87
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.87
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.87
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.93
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.86
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.85
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.83
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.83
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.83
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.94
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.92
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.92
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.69
rrl 1476614 n.2957A>G non_coding_transcript_exon_variant 0.82
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.7
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.88
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.57
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.62
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.62
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.44
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.36
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.36
rrl 1476675 n.3018C>G non_coding_transcript_exon_variant 0.3
rrl 1476728 n.3071T>C non_coding_transcript_exon_variant 1.0
rpsA 1833928 c.387G>C synonymous_variant 0.67
rpsA 1833949 c.408T>C synonymous_variant 1.0
rpsA 1833970 c.429G>C synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833988 c.447C>T synonymous_variant 1.0
rpsA 1833991 c.450C>G synonymous_variant 1.0
rpsA 1833994 c.453G>C synonymous_variant 1.0
rpsA 1834000 c.459G>C synonymous_variant 1.0
rpsA 1834009 c.468C>T synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>C synonymous_variant 1.0
rpsA 1834021 c.480C>T synonymous_variant 1.0
rpsA 1834030 c.489C>G synonymous_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 1.0
rpsA 1834240 c.699T>G synonymous_variant 0.67
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 0.67
rpsA 1834306 c.765T>C synonymous_variant 0.5
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2518606 c.492G>C synonymous_variant 0.67
kasA 2518609 p.Met165Ile missense_variant 0.67
kasA 2518624 c.510C>G synonymous_variant 0.67
kasA 2518627 c.513T>C synonymous_variant 0.67
kasA 2518633 c.519G>C synonymous_variant 0.67
kasA 2518636 c.522C>G synonymous_variant 0.67
kasA 2518642 c.528A>G synonymous_variant 0.67
kasA 2518656 p.Ala181Gly missense_variant 1.0
kasA 2518663 c.549T>G synonymous_variant 1.0
kasA 2518672 c.558G>C synonymous_variant 1.0
kasA 2518678 c.564C>T synonymous_variant 0.67
kasA 2518681 c.567C>T synonymous_variant 0.67
kasA 2518684 c.570C>G synonymous_variant 0.67
kasA 2518688 p.Val192Phe missense_variant 0.67
kasA 2518697 p.Cys195Val missense_variant 0.67
kasA 2518705 c.591T>C synonymous_variant 0.67
kasA 2518708 c.594C>G synonymous_variant 0.5
kasA 2518714 c.600A>C synonymous_variant 0.5
kasA 2518715 p.Pro201Gly missense_variant 0.5
thyA 3073902 c.570C>G synonymous_variant 0.5
thyA 3073925 c.547T>C synonymous_variant 0.5
thyA 3073929 c.543T>C synonymous_variant 0.67
thyA 3073956 c.516G>C synonymous_variant 0.67
thyA 3073959 c.513T>C synonymous_variant 0.67
thyA 3073977 c.495A>G synonymous_variant 0.5
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
rpoA 3878163 c.345C>T synonymous_variant 0.4
rpoA 3878187 c.321C>G synonymous_variant 0.5
rpoA 3878193 c.315T>C synonymous_variant 0.5
rpoA 3878205 c.303T>A synonymous_variant 0.5
rpoA 3878217 c.291A>G synonymous_variant 0.5
rpoA 3878247 c.261G>C synonymous_variant 0.5
rpoA 3878256 c.252G>C synonymous_variant 0.67
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4039073 c.1632C>T synonymous_variant 0.29
clpC1 4039085 c.1620A>G synonymous_variant 0.33
clpC1 4039112 c.1593C>G synonymous_variant 0.4
clpC1 4039118 c.1587C>G synonymous_variant 0.4
clpC1 4039121 c.1584T>C synonymous_variant 0.4
clpC1 4039139 c.1566G>A synonymous_variant 0.4
clpC1 4039142 c.1563A>G synonymous_variant 0.4
clpC1 4039145 c.1560G>C synonymous_variant 0.4
clpC1 4039166 c.1539G>A synonymous_variant 0.33
clpC1 4039178 c.1527G>C synonymous_variant 0.4
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.4
clpC1 4039187 c.1518G>T synonymous_variant 0.5
clpC1 4039430 c.1275T>C synonymous_variant 0.4
clpC1 4039442 c.1263A>G synonymous_variant 0.5
clpC1 4039448 c.1257A>G synonymous_variant 0.5
clpC1 4039454 c.1251A>T synonymous_variant 0.33
clpC1 4039544 c.1161C>T synonymous_variant 0.33
clpC1 4039553 c.1152C>G synonymous_variant 0.33
clpC1 4039622 c.1083C>T synonymous_variant 0.5
clpC1 4039649 c.1056G>C synonymous_variant 0.5
clpC1 4039652 c.1053G>C synonymous_variant 0.5
clpC1 4039850 c.855T>C synonymous_variant 0.5
clpC1 4039865 c.840T>C synonymous_variant 0.4
clpC1 4039889 c.816G>T synonymous_variant 0.33
clpC1 4039898 c.807C>G synonymous_variant 0.33
clpC1 4040408 c.297C>A synonymous_variant 0.4
clpC1 4040411 c.294T>C synonymous_variant 0.4
clpC1 4040426 c.279T>C synonymous_variant 0.6
clpC1 4040431 c.274T>C synonymous_variant 0.6
clpC1 4040432 c.273C>T synonymous_variant 0.6
clpC1 4040447 c.258G>A synonymous_variant 0.5
clpC1 4040450 c.255A>G synonymous_variant 0.5
clpC1 4040459 c.246C>G synonymous_variant 0.5
clpC1 4040462 c.243C>A synonymous_variant 0.5
clpC1 4040465 c.240T>C synonymous_variant 0.5
clpC1 4040468 c.237G>C synonymous_variant 0.5
clpC1 4040471 c.234T>C synonymous_variant 0.5
clpC1 4040477 c.228G>T synonymous_variant 0.5
clpC1 4040480 c.225T>C synonymous_variant 0.5
clpC1 4040486 c.219G>T synonymous_variant 0.5
clpC1 4040522 c.183T>C synonymous_variant 0.5
clpC1 4040528 c.177G>C synonymous_variant 0.5
clpC1 4040531 c.174T>A synonymous_variant 0.43
clpC1 4040534 c.171A>G synonymous_variant 0.33
clpC1 4040537 c.168G>C synonymous_variant 0.33
clpC1 4040540 c.165G>C synonymous_variant 0.33
clpC1 4040546 c.159G>T synonymous_variant 0.33
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4249081 c.2568C>T synonymous_variant 0.5
embB 4249640 c.3127T>C synonymous_variant 1.0
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0