EBG00000313339 - n.873G>A


Drug resistance types
11 Sensitive 65 RR-TB 22 HR-TB 65 MDR-TB 28 Pre-XDR-TB 1 XDR-TB 200 Other
lineage Counts
lineage Count
lineage2.2.2 8
lineage4.1.2.1 19
lineage4.1.1.3 6
lineage4.3 3
lineage4.4.1.1.1 2
lineage4.8 70
lineage3 18
lineage2.2.1 72
lineage4.9 49
lineage4.1.2.1;lineage4.4.1 1
lineage4.4.1.2 3
La1.6 1
lineage4.2.1.1;lineage4.3.3 1
lineage4.2.1 12
lineage4.1.1.1 5
lineage4.3.3 11
lineage4.1.2 4
lineage4.2.1.1 2
lineage4.2.2.2 4
lineage4.3.4.1 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3;lineage4 1
lineage4.1.3 1
lineage4.3.4.2.1 6
lineage4.2.2 1
lineage4.4.1.1 6
lineage4 2
lineage1.2.2.2 4
lineage3.1.1;lineage4.9 1
lineage6.1.3 1
lineage3.1.1 3
lineage4.1.1.3.1;lineage4.9 1
lineage4.6.1.1 1
lineage4.3.4.2;lineage4.9 1
lineage4.7 4
lineage4.3.4.2 4
lineage2.2.1.1 3
lineage1.1.1.1 1
lineage4.8;lineage4.9 1
lineage4.6.2.2 4
lineage1.1.3.1 1
lineage4.3.2.1 2
lineage4.1;lineage4.9 1
lineage4.1.1.3.1 3
lineage3.1.2.1 4
lineage2.2.1;lineage4 1
lineage4.4.2 4
lineage4.3.2 3
lineage3.1.2.2 2
lineage4.1.2.1;lineage4.9 2
lineage2.2;lineage4 1
lineage4.8.1 2
lineage2.2.1;lineage4.9 1
La1.7.1 1
lineage6.1.2 1
lineage4.4 1
La1.8.1 4
lineage4.5 1
lineage4.3.1.1 1
lineage2.2.1;lineage2.2.2 1
lineage1.1.3.3 1
2
lineage1.2.1.1 1
lineage2.2.1;lineage4.8 1
lineage3;lineage4.2.2.2 1
lineage2.2.1;lineage4.2.1 1
La2 1
lineage3.1.2;lineage4.1.1.3.1 1
lineage3.1.2.1;lineage4.9 1
lineage5.1.1 1
lineage1.1.3.2 1
lineage4.1.2.1;lineage4.4.1.1 1
lineage4.6.5 1
lineage4.9.1 1
spoligotype Counts
spoligotype Count
None 392
Geographic prevalence
Country level data for this variant is available for 9 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR18002998 Pre-XDR-TB lineage2.2.2 None
ERR4816856 Other lineage4.1.2.1 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR9117760 HR-TB lineage4.3 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
ERR978760 RR-TB lineage4.8 None
SRR6046442 Other lineage3 None
SRR7070144 Other lineage4.8 None
SRR11349207 RR-TB lineage2.2.1 None
SRR18572455 Sensitive lineage4.9 None
SRR1049725 Other lineage4.1.2.1;lineage4.4.1 None
ERR4024582 MDR-TB lineage4.1.2.1 None
SRR6397733 Other lineage4.4.1.2 None
SRR6044952 Other lineage4.9 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR18002999 Pre-XDR-TB lineage2.2.1 None
ERR978755 RR-TB lineage4.8 None
SRR10993951 RR-TB La1.6 None
ERR978746_ERR978747_ERR978748 RR-TB lineage4.8 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR7645971 Other lineage2.2.1 None
SRR7645977 MDR-TB lineage4.2.1 None
SRR6397579 Other lineage4.4.1.2 ca
SRR9971372 MDR-TB lineage4.1.1.1 None
SRR7131147 Other lineage4.1.2.1 None
SRR18002933 Other lineage2.2.1 None
ERR978747 Other lineage4.8 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
ERR10796628 Other lineage4.3.3 None
ERR5162090 RR-TB lineage4.9 None
SAMN02628522 Pre-XDR-TB lineage3 ir
ERR2229811 Other lineage4.8 dk
ERR10796581 Other lineage4.1.2 None
SRR6397640 Other lineage4.2.1.1 None
ERR4457829 MDR-TB lineage4.1.2.1 None
ERR978726 RR-TB lineage4.8 None
SRR11342687 RR-TB lineage4.2.2.2 None
SAMEA3501015 Other lineage4.8 None
ERR867524 Pre-XDR-TB lineage4.2.1 None
SRR19303817 Other lineage2.2.1 None
SRR6152899 MDR-TB lineage2.2.2 ca
ERR3275941 RR-TB lineage4.3 nl
SRR10869071 MDR-TB lineage2.2.1 None
SRR7645973 Other lineage4.3.4.1 None
SRR7131152 MDR-TB lineage2.2.1 None
SRR6045603 Other lineage4.1.1.3 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR3675230 Other lineage3;lineage4 None
ERR2228838 Other lineage4.8 None
ERR2513405 Other lineage2.2.1 None
SRR11342671 RR-TB lineage4.1.3 None
SRR7645927 Other lineage4.8 None
ERR3275709 HR-TB lineage3 nl
ERR176771 Sensitive lineage4.3.4.2.1 None
ERR978750_ERR978752_ERR978751 RR-TB lineage4.8 None
SRR18002937 Other lineage2.2.1 None
SRR11342686 MDR-TB lineage4.8 None
ERR978755_ERR978756_ERR978754_ERR978757 RR-TB lineage4.8 None
SRR19303949 Other lineage4.3.3 None
ERR10796640 Other lineage4.1.2.1 None
SRR1140736 Other lineage4.1.2.1 None
SRR1049674 HR-TB lineage2.2.1 None
SRR7645972 MDR-TB lineage4.2.1 None
ERR10796568 Other lineage4.9 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR6152980 HR-TB lineage4.8 ca
SRR11342636 MDR-TB lineage4.3.3 None
SRR19304104 Other lineage4.8 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
ERR5979454 Pre-XDR-TB lineage3 None
SRR11342684 HR-TB lineage4.4.1.1 None
SRR7496471 Sensitive lineage4 None
ERR502473 RR-TB lineage4.9 None
SAMN02380982 MDR-TB lineage4.3.4.2.1 None
SRR11342688 Other lineage4.2.2.2 None
SRR6044841 Other lineage4.9 None
SRR12708411 HR-TB lineage1.2.2.2 None
ERR867572 Other lineage4.9 None
ERR867570 RR-TB lineage4.9 None
ERR10796596 Other lineage4.9 None
ERR171142 Other lineage3.1.1;lineage4.9 None
SRR6045496 Other lineage6.1.3 None
ERR5979407 Other lineage3 None
SRR6045516 Other lineage3.1.1 None
ERR4819198 Other lineage2.2.1 None
ERR4769506 Sensitive lineage4.9 None
SRR11342698 RR-TB lineage4.4.1.1 None
SRR18002967 HR-TB lineage2.2.1 None
ERR502474 RR-TB lineage4.9 None
SRR7131149 Pre-XDR-TB lineage4.8 None
SRR5007161 RR-TB lineage4.1.1.3.1;lineage4.9 None
ERR10796577 Other lineage4.9 None
ERR2228910 Other lineage4.8 None
ERR4813263 MDR-TB lineage4.8 None
SRR1173421 Other lineage4.9 None
SRR7535047 RR-TB lineage4.6.1.1 None
SRR3675509 Other lineage4.9 None
ERR10796631 Other lineage4.3.4.2;lineage4.9 None
SAMEA3501067 RR-TB lineage4.8 None
ERR126597 HR-TB lineage4.4.1.2 None
SRR6045295 Other lineage4.7 None
SRR7131145 Other lineage4.1.2.1 None
SRR19303818 Other lineage4.3.4.2 None
SRR19303820 RR-TB lineage4.8 None
ERR10796598 Other lineage4.9 None
SRR18003023 Other lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR15276982 XDR-TB lineage3 None
SRR12062533 Pre-XDR-TB lineage2.2.1.1 None
ERR270777 HR-TB lineage4.1.2 None
SRR18002980 Other lineage2.2.1 None
SRR7131195 Other lineage2.2.1 None
ERR752012 HR-TB lineage1.1.1.1 None
ERR2229233 Sensitive lineage4.8;lineage4.9 None
SRR11342676 HR-TB lineage4.6.2.2 None
ERR4819383 RR-TB lineage4.9 None
SRR6045957 Other lineage4.9 None
SRR9971122 MDR-TB lineage4.8 None
ERR4814617 Other lineage1.1.3.1 None
SRR7069839 Other lineage4.8 None
ERR867571 Other lineage4.9 None
ERR978726_ERR978727 RR-TB lineage4.8 None
SAMEA3501070 RR-TB lineage4.8 None
ERR2027230 Other lineage4.2.2.2 None
SRR9971168 Other lineage4.3.2.1 None
ERR10796629 Other lineage4.1;lineage4.9 None
SRR1173833 Other lineage4.9 None
SAMEA3501052 RR-TB lineage4.8 None
SRR19303899 Other lineage3 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
ERR5865953 MDR-TB lineage2.2.1 None
SAMEA3501065 RR-TB lineage4.8 None
SRR22048536 Other lineage4.3.3 None
ERR978733 RR-TB lineage4.8 None
ERR4819011 Other lineage3.1.2.1 None
ERR10762275 MDR-TB lineage4.2.1 None
SRR7070320 Other lineage4.8 None
ERR2513382 RR-TB lineage4.1.1.3 None
SRR7069347 Other lineage4.1.2.1 None
SRR17567917 RR-TB lineage4.4.1.1 None
ERR867568 Other lineage2.2.1;lineage4 None
ERR978756 Other lineage4.8 None
SRR12062493 Pre-XDR-TB lineage4.4.2 None
ERR10796561 Other lineage4.3.2 None
SRR11349191 Pre-XDR-TB lineage4.3.3 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
ERR4819579 HR-TB lineage4.3.3 None
SRR6046440 Other lineage3.1.2.2 None
ERR502481 RR-TB lineage4.9 None
SRR16156697 RR-TB lineage2.2.1 None
SRR6045553 Other lineage4.1.2.1;lineage4.9 None
SRR3675265 Other lineage4 None
SRR11342669 Other lineage4.8 None
ERR10796564 Other lineage4.3.3 None
SRR7755655 Other lineage4.1.2.1 None
SRR15316595 RR-TB lineage4.4.2 None
ERR4816717 RR-TB lineage3.1.2.1 None
SAMEA3501073 RR-TB lineage4.8 None
SRR1140724 Other lineage2.2.1 None
DRR184629 Other lineage2.2.1 None
SRR6045464 Other lineage4.1.1.3 None
SRR7131161 Other lineage4.8 None
ERR10219876 Other lineage4.3.4.2 None
ERR983238 MDR-TB lineage2.2.1.1 None
ERR4818050 Sensitive lineage4.6.2.2 None
ERR978757 RR-TB lineage4.8 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR2027257 Other lineage4.1.2.1 None
SRR16156832 RR-TB lineage2.2;lineage4 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR10303325 MDR-TB lineage2.2.1 None
SRR6045909 Other lineage4.8.1 None
SRR10430377 MDR-TB lineage2.2.1 None
SRR6045267 RR-TB lineage4.8 None
ERR10796634 Other lineage4.7 None
SRR5341365 Pre-XDR-TB lineage3 None
SRR12708406 HR-TB lineage2.2.1;lineage4.9 None
ERR4820720 Other lineage4.1.2.1 None
ERR978762 Other lineage4.8 None
SRR18002976 Other lineage2.2.1 None
ERR1815538 Other La1.7.1 None
SRR5818647 Other lineage4.3.4.2.1 None
SRR19304094 Other lineage6.1.2 None
SRR16627752 RR-TB lineage4.4 None
ERR5087596 Other La1.8.1 None
SRR11342660 MDR-TB lineage2.2.1 None
SRR7070293 Other lineage4.8 None
SRR18002956 Other lineage2.2.1 None
ERR978727 Other lineage4.8 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR18003009 MDR-TB lineage2.2.1 None
ERR4816470 HR-TB lineage3 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR1175052 HR-TB lineage4.9 None
ERR3283032 Other lineage4.9 None
ERR911930 Other lineage4.8 None
ERR502478 RR-TB lineage4.9 None
SRR7131237 Other lineage2.2.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
SRR18003007 MDR-TB lineage4.5 None
SRR1062928 Other lineage4.1.2.1;lineage4.9 None
SRR7645906 Other lineage2.2.1 None
SRR11972417 MDR-TB lineage2.2.1 None
SRR5007204 Other lineage4.1.2.1 None
SRR6046616 Other lineage4.3.1.1 None
SRR18002930 MDR-TB lineage2.2.1 None
SRR12062542 Pre-XDR-TB lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
ERR5311077 Other La1.8.1 None
SRR11342646 HR-TB lineage3 None
SRR6397815 Other lineage4.4.1.1 None
ERR10796578 Other lineage2.2.1 None
ERR867544 Other lineage4.9 None
ERR9117788 Other lineage3 None
SRR11342643 MDR-TB lineage4.1.1.1 None
ERR10762495 MDR-TB lineage2.2.1 None
ERR978767 RR-TB lineage4.8 None
ERR2229366 Other lineage4.8 None
ERR10796560 Other lineage4.9 None
SRR19303907 Other lineage4.8 None
SRR19303815 Other lineage4.8 None
SRR11349203 MDR-TB lineage4.4.1.1 None
ERR867540 MDR-TB lineage2.2.1 None
ERR978766 RR-TB lineage4.8 None
ERR978767_ERR978765_ERR978766 RR-TB lineage4.8 None
SRR1173170 Other lineage4.9 None
SRR1173719 Other lineage4.9 None
ERR2228899 Other lineage4.8 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR11342638 MDR-TB lineage4.4.1.1.1 None
SRR7069648 Other lineage4.6.2.2 None
ERR867538 Other lineage4.2.2.2 None
ERR10796636 Other lineage4.1.2.1 None
ERR10796589 Other lineage4.9 None
SRR18003024 RR-TB lineage2.2.1 None
SRR13423546 Other lineage4.4.2 None
ERR10762248 MDR-TB lineage4.2.1 None
SRR11342658 RR-TB lineage4.1.2 None
ERR10796553 Other lineage4.9 None
SRR3675389 Other lineage4.9 None
ERR978734 RR-TB lineage4.8 None
SRR18003032 Other lineage2.2.1 None
ERR978734_ERR978733_ERR978735 RR-TB lineage4.8 None
ERR978746 RR-TB lineage4.8 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR18003045 Other lineage2.2.1 None
SRR6045191 Sensitive lineage4.9 None
ERR10796593 Other lineage4.3 None
ERR2229147 Other lineage4.8 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR19304115 Other lineage4.1.2.1 None
SRR1062919 HR-TB lineage2.2.1 None
SRR18002876 MDR-TB lineage2.2.1;lineage2.2.2 None
SRR7068912 Pre-XDR-TB lineage2.2.1 None
SRR7646014 MDR-TB lineage4.2.1 None
SRR6045384 Other lineage4.1.2.1 None
SRR1062871 RR-TB lineage4.3.4.2.1 None
ERR3283006 RR-TB lineage4.9 None
SRR18002947 MDR-TB lineage2.2.1 None
ERR4819863 RR-TB lineage4.9 None
ERR978754 RR-TB lineage4.8 None
ERR978761 Other lineage4.8 None
ERR4972588 MDR-TB lineage4.3.2 None
SRR7496523 Other lineage4.7 None
SRR18002987 Other lineage2.2.1 None
SRR6046729 Other lineage3 None
SRR18002901 MDR-TB lineage2.2.1 None
SRR7070157 Other lineage4.1.1.3.1 None
SAMEA3501046 RR-TB lineage4.8 None
ERR4798769 Other lineage1.1.3.3 None
ERR4817069 RR-TB None
SRR7535086 Other None
SRR1049560 MDR-TB lineage4.3.4.2.1 None
SRR7070369 Other lineage1.2.2.2 None
ERR4819166 Other lineage3 gb
SRR1049675 HR-TB lineage2.2.1 None
SRR10869285 Pre-XDR-TB lineage2.2.2 None
SRR18002964 Other lineage2.2.1 None
SRR11342662 MDR-TB lineage4.8.1 None
ERR10796562 Other lineage4.3.4.1 None
SRR7755657 Other lineage4.8 None
ERR10796635 Other lineage4.8 None
ERR4821172 RR-TB lineage4.9 None
ERR2027209 MDR-TB lineage1.2.1.1 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR18002891 MDR-TB lineage2.2.1 None
ERR978694 Other lineage4.8 None
SRR20632814 Sensitive lineage4.9 None
SRR7070134 Other lineage3.1.1 None
SRR11342673 RR-TB lineage4.3.4.2 None
ERR473298 Sensitive lineage4.6.2.2 None
ERR2600562 MDR-TB lineage2.2.1;lineage4.8 None
ERR867527 Pre-XDR-TB lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
ERR978694_ERR978693 Other lineage4.8 None
SRR7131123 Other lineage4.8 None
ERR3468613 Other La1.8.1 None
SRR7131236 Other lineage4.3.4.2 None
SRR18002974 Other lineage2.2.1 None
ERR4769554 RR-TB lineage4.9 None
ERR9117827 Other lineage1.2.2.2 None
SRR22175249 Pre-XDR-TB lineage2.2.1 None
SRR7131229 Other lineage4.1.2.1 None
ERR10796626 Other lineage4.1.2.1 None
ERR10796599 Other lineage4.8 None
SRR6046117 Other lineage4.9 None
SRR7755642 MDR-TB lineage4.2.1 None
ERR2513259 Other lineage3 None
ERR867575 Other lineage4.9 None
SRR21727760 Other lineage2.2.1 None
ERR2229234 Sensitive lineage4.8 None
SRR18002872 Pre-XDR-TB lineage2.2.1 None
SRR5818694 Other lineage3;lineage4.2.2.2 None
ERR10796620 Other lineage4.1.1.1 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
ERR978761_ERR978762_ERR978760 RR-TB lineage4.8 None
SRR6046343 Other lineage2.2.1 None
SRR7069687 Other lineage4.1.1.3.1 None
ERR978735 Other lineage4.8 None
ERR10796571 Other lineage4.9 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR18913779 Other lineage3 None
SRR7069800 Other lineage3.1.2.1 None
SRR7070535 HR-TB lineage4.1.2.1 None
SRR11342651 MDR-TB lineage4.1.1.1 None
ERR978748 Other lineage4.8 None
SRR18002963 Other lineage2.2.1 None
SRR7755652 Pre-XDR-TB lineage2.2.1;lineage4.2.1 None
ERR978765 RR-TB lineage4.8 None
SRR13888750 Other La2 None
SRR6982141 Other lineage4.3.3 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
ERR2514430 Other lineage3.1.2;lineage4.1.1.3.1 None
ERR10796592 Other lineage4.9 None
SRR7069835 Other lineage2.2.1 None
ERR10796591 Other lineage4.9 None
SRR9971223 Other lineage2.2.1 None
SRR7645928 Other lineage4.7 None
SRR3675582 Other lineage4.9 None
SRR7755649 MDR-TB lineage4.2.1 None
ERR2027290 Other lineage3.1.2.1;lineage4.9 None
SRR6046484 Other lineage1.2.2.2 None
ERR4972567 MDR-TB lineage4.3.2 None
SRR9971270 RR-TB lineage2.2.1 None
SRR7070329 Other lineage3 None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR7645899 Other lineage2.2.1 None
ERR867523 Pre-XDR-TB lineage2.2.1 None
ERR502517 Other lineage5.1.1 None
ERR978693 Other lineage4.8 None
ERR4820030 Other lineage4.9 None
SRR7131287 Other lineage2.2.1.1 None
SRR7646018 MDR-TB lineage4.2.1 None
ERR867541 MDR-TB lineage4.2.1 None
ERR978751 Other lineage4.8 None
SAMEA3501063 RR-TB lineage4.8 None
SRR11342664 MDR-TB lineage2.2.2 None
SRR7069074 Other lineage3 None
SRR7131121 Other lineage4.3.3 None
SRR7069664 Other lineage4.1.2 None
ERR2514801 Other lineage1.1.3.2 gb
SRR1180179 Pre-XDR-TB lineage3 None
SRR1172885 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
SRR11342640 MDR-TB lineage4.3.3 None
SRR1049726 Other lineage4.1.2.1;lineage4.4.1.1 None
SRR6046848 Other lineage4.6.5 None
SRR7069946 Other lineage4.8 None
ERR2600422 MDR-TB lineage2.2.1 None
ERR3468488 Other La1.8.1 None
ERR3797062 RR-TB lineage4.9 None
ERR2228900 Other lineage4.8 None
DRR185024 Other lineage2.2.2 None
SRR6045158 Other lineage4.9 None
ERR978752 Other lineage4.8 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR6045017 Other lineage3.1.2.2 None
SRR7069097 Other lineage3.1.2.1 None
SRR11342647 MDR-TB lineage4.1.1.3 None
ERR978750 RR-TB lineage4.8 None
ERR502470 RR-TB lineage4.9 None
SRR1173310 Other lineage3.1.1 None
ERR037504 Other lineage4.9.1 None
SRR7131216 Other lineage4.1.2.1 None
SRR6785281 Other lineage4.2.1.1 None
SRR1173770 Other lineage4.9 None