EBG00000313339 - n.2972C>A


Drug resistance types
103 Sensitive 37 RR-TB 43 HR-TB 62 MDR-TB 23 Pre-XDR-TB 0 XDR-TB 111 Other
lineage Counts
lineage Count
lineage4.3.3 15
lineage2.2.1 44
lineage4.9 115
lineage4.3.2 2
lineage4.3.2.1 7
lineage3 17
lineage4.2.1 3
lineage2.2.2 4
lineage4.6.5 1
lineage2;lineage4.9 1
lineage4.1.2.1 11
La1.3 5
lineage4.1.2.1;lineage4.4.1.1 1
lineage4.2.2.2 2
lineage4.3.3;lineage4.9 1
lineage4.3.4.2.1 14
lineage2.1;lineage4.9 2
lineage4.6.2.2 1
lineage3.1.1 2
lineage4.6.1.2 5
lineage2;lineage4 1
lineage2.2.1;lineage4.9 3
lineage4.4.1.1.1 4
lineage4.6.4 1
3
lineage4.1.2.1;lineage4.4.1 1
lineage3.1.2.1 3
lineage4.9;lineage5.1.1 1
lineage4.4.1.1 9
lineage2.1;lineage4.9;lineage7 1
lineage4.3.4.1 6
lineage1.2.2.2 3
lineage2.2.1.1 1
lineage4.1.1.3 8
lineage4.1.1.1 5
lineage4.8 10
lineage4.1.2 2
lineage4.8.1 5
lineage2.2.1;lineage4 2
lineage4 3
lineage4.1.3 2
lineage1.2.2 2
lineage4.3.3;lineage4.8 4
La2 1
La1.6 3
La1;lineage4.9 1
lineage4.1.2.1;lineage4.9 1
lineage5.1.1 3
lineage1.2.1.2 1
lineage4.5 1
La1.2 1
La1.8.1 5
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.3.3;lineage4.3.4.2 1
lineage1.1.1.1 2
La1.4 1
lineage1.1.3.2 3
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.9;lineage7 2
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage3.1.3 1
lineage4.4.2 1
lineage3.1.2.1;lineage4.9 1
lineage3;lineage4 1
lineage4.1.1.3.1;lineage4.9 1
lineage4.6.1.1 1
M.canetti;lineage2.1 1
lineage4.4.1.2 1
lineage4.1.1.3;lineage4.9 1
lineage4.7 1
lineage4.2.1.1;lineage4.3.3 1
lineage1.2.1.1 1
lineage4.3.4.2 3
lineage3.1.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 379
Geographic prevalence
Country level data for this variant is available for 20 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR1213875 Sensitive lineage4.3.3 de
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR1181325 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1181214 Other lineage4.9 None
ERR1213930 Other lineage4.3.2 pe
SRR6982342 Sensitive lineage4.3.2.1 None
ERR4814976 Other lineage4.9 None
SRR11342646 HR-TB lineage3 None
ERR867541 MDR-TB lineage4.2.1 None
SRR5341267 Pre-XDR-TB lineage3 None
SRR1183054 Sensitive lineage4.9 None
SRR11342664 MDR-TB lineage2.2.2 None
ERR4814745 Other lineage4.6.5 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR4816417 Other lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
ERR323037 Other lineage4.9 None
ERR4819622 Other lineage4.1.2.1 None
ERR502474 RR-TB lineage4.9 None
ERR4769552 Sensitive La1.3 None
SRR1172717 Sensitive lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR6358951 Sensitive lineage4.9 None
SRR1049726 Other lineage4.1.2.1;lineage4.4.1.1 None
ERR4819546 HR-TB lineage3 None
ERR4769444 HR-TB lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
ERR867538 Other lineage4.2.2.2 None
SRR6832644 Other lineage4.3.3;lineage4.9 None
SRR21677886 Sensitive lineage4.9 None
ERR2660498 Sensitive lineage4.3.4.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
ERR4821679 Other lineage4.3.3 None
SRR12708392 Other lineage2.2.1 None
SRR11342676 HR-TB lineage4.6.2.2 None
SRR1173310 Other lineage3.1.1 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR1140753 RR-TB lineage4.3.4.2.1 None
SRR1062919 HR-TB lineage2.2.1 None
ERR1023502 MDR-TB lineage2;lineage4 None
SRR1180446 Other lineage4.9 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR867525 Pre-XDR-TB lineage2.2.1 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR2100532 Sensitive lineage3 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
SRR1180410 Sensitive lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
SRR6045359 HR-TB lineage4.9 None
ERR1679639 Other lineage4.6.4 None
ERR4796577 HR-TB None
ERR4817060 Other None
SRR1049725 Other lineage4.1.2.1;lineage4.4.1 None
ERR6359074 HR-TB lineage4.9 None
ERR4820798 Other lineage3.1.2.1 gb
ERR1082121 Sensitive lineage4.9;lineage5.1.1 None
SRR1181368 Other lineage4.9 None
ERR4819948 Other lineage4.4.1.1 None
ERR4769530 RR-TB lineage4.9 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
ERR867566 Other lineage4.9 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR1175472 RR-TB lineage4.3.4.1 None
SRR6982115 Sensitive lineage4.3.2 None
SRR1180345 Other lineage4.9 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR867527 Pre-XDR-TB lineage2.2.1 None
SRR1180375 Sensitive lineage4.9 None
SRR5152926 MDR-TB lineage2.2.1 None
SRR3619764 Pre-XDR-TB lineage2.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
ERR4819579 HR-TB lineage4.3.3 None
ERR9786076 Other lineage3 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
ERR4815225 Other lineage1.2.2.2 None
SRR21657198 HR-TB lineage4.3.3 None
SRR6045832 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR1140724 Other lineage2.2.1 None
ERR4821119 Other lineage4.4.1.1 None
ERR2513229 MDR-TB lineage2.2.1 None
SRR6046141 Other lineage4.9 None
SRR1173385 Sensitive lineage4.9 None
SRR18909918 Other lineage2.2.1.1 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR4769433 RR-TB lineage4.9 None
ERR2513259 Other lineage3 None
SRR6982168 Sensitive lineage4.4.1.1 None
ERR9786498 Sensitive lineage4.1.2.1 None
SRR18911231 Sensitive lineage4.1.1.3 None
ERR1035295 MDR-TB lineage4.1.2.1 br
ERR176741 Other lineage4.9 None
SRR6982471 Sensitive lineage2.2.1 None
SRR6797751 MDR-TB lineage2.2.1 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR867524 Pre-XDR-TB lineage4.2.1 None
SRR5153091 HR-TB lineage4.3.3 None
ERR176780 Sensitive lineage4.9 None
ERR4816610 Other lineage4.3.3 None
SRR1184021 Sensitive lineage4.9 None
ERR1213873 MDR-TB lineage4.3.4.2.1 rw
SRR6045267 RR-TB lineage4.8 None
SRR6981912 Sensitive lineage4.3.2.1 None
SRR11342682 Other lineage4.1.2 None
ERR867574 Other lineage4.9 None
SRR9971150 RR-TB lineage4.8.1 None
ERR867573 Other lineage4.9 None
ERR2660536 Sensitive lineage2.2.1 None
SRR12708407 HR-TB lineage4.3.2.1 None
SRR7755654 Pre-XDR-TB lineage4.2.1 None
ERR1035297 MDR-TB lineage4.3.4.1 br
ERR176580 Sensitive lineage4.3.4.2.1 None
ERR4769439 HR-TB lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR11342668 Pre-XDR-TB lineage4.8.1 None
SRR10315751 MDR-TB lineage4.8 None
ERR4769514 Other La1.3 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR1181349 Sensitive lineage4 None
ERR4821263 Other lineage4.1.3 gb
ERR4818988 Other lineage1.2.2 None
SRR1180312 Sensitive lineage4.9 None
SRR12708414 HR-TB lineage2.2.1 None
SRR1062920 MDR-TB lineage4.3.3;lineage4.8 None
SRR11342660 MDR-TB lineage2.2.1 None
ERR867526 MDR-TB lineage2.2.1 None
ERR216910 Sensitive lineage4.3.4.2.1 None
SRR1181283 Sensitive lineage4.9 None
SRR13888750 Other La2 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
SRR1175508 Sensitive lineage4.9 None
SRR1049677 MDR-TB lineage4.3.3;lineage4.8 None
SRR10993944 Other La1.6 None
SRR7069835 Other lineage2.2.1 None
SRR1175052 HR-TB lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
SAMN02380982 MDR-TB lineage4.3.4.2.1 None
ERR502478 RR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR11342653 MDR-TB lineage2.2.1 None
ERR4819096 Other lineage4.4.1.1 None
ERR4769550 Sensitive La1;lineage4.9 None
ERR867572 Other lineage4.9 None
SRR1062928 Other lineage4.1.2.1;lineage4.9 None
SRR1172807 Sensitive lineage4.9 None
ERR867570 RR-TB lineage4.9 None
ERR867523 Pre-XDR-TB lineage2.2.1 None
SRR1175474 Other lineage4.9 None
SRR11342693 MDR-TB lineage4.8.1 None
ERR502517 Other lineage5.1.1 None
ERR4814639 HR-TB lineage4.9 None
ERR133816 MDR-TB lineage2.2.1 None
SRR20969475 Other lineage1.2.1.2 None
SRR1180250 Other lineage4.9 None
ERR2179695 Sensitive lineage4.5 None
SRR11342698 RR-TB lineage4.4.1.1 None
ERR736831 Other lineage4.9 None
SRR12708409 HR-TB lineage4.3.3 None
ERR1035312 Pre-XDR-TB lineage4.3.3 br
ERR1035294 MDR-TB lineage4.1.2.1 br
ERR4769418 Other La1.2 None
ERR4818831 Other lineage3 None
SRR7236330 Other La1.8.1 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
SRR1238557 Other lineage4.9 None
SRR5152904 Other lineage2.2.1 None
SRR6981962 Sensitive lineage4.3.2.1 None
SRR19303820 RR-TB lineage4.8 None
SRR1175512 Sensitive lineage4.9 None
ERR1034911 MDR-TB lineage4.3.3;lineage4.3.4.2 pt
SRR11342647 MDR-TB lineage4.1.1.3 None
DRR099689 Sensitive lineage1.1.1.1 None
ERR4769555 Sensitive La1.3 None
SRR6045191 Sensitive lineage4.9 None
SRR1173185 Other lineage4.9 None
SRR16278274 Other La1.4 None
ERR216950 Sensitive lineage1.1.3.2 None
ERR867571 Other lineage4.9 None
SRR1175491 MDR-TB lineage4.3.4.1 None
ERR1035315 Pre-XDR-TB lineage4.3.4.1 br
SRR12708371 HR-TB lineage4.1.1.3 None
ERR4815815 Sensitive lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR867522 Pre-XDR-TB lineage2.2.1 None
ERR144568 Sensitive None
SRR1049560 MDR-TB lineage4.3.4.2.1 None
SRR1180406 Sensitive lineage4.9 None
SRR1049675 HR-TB lineage2.2.1 None
ERR323061 Sensitive lineage4.9 None
ERR4816852 Other lineage4.9 None
SRR6982178 Sensitive lineage2.2.1 None
SRR1140574 MDR-TB lineage4.3.3;lineage4.8 None
SRR1180300 Sensitive lineage4.9 None
SRR10993951 RR-TB La1.6 None
SRR1181403 Other lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR4816549 Other lineage2.2.1 None
SRR12708418 HR-TB lineage2.2.1 None
ERR1082134 Sensitive lineage5.1.1 None
SRR7645853 MDR-TB lineage2.2.1 None
SRR6982472 Sensitive lineage4.4.1.1 None
ERR867568 Other lineage2.2.1;lineage4 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
ERR4769493 Other lineage4.9 None
ERR4769408 Other La1.3 None
ERR2660499 Sensitive lineage4.1.1.3 None
SRR1181256 Other lineage4.9 None
SRR6982257 Sensitive lineage4.1.2.1 None
ERR161201 Sensitive lineage1.1.3.2 None
SRR1180420 Sensitive lineage4.9 None
ERR2124083 HR-TB lineage4.6.1.2 None
ERR10796628 Other lineage4.3.3 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR11462861 Other La1.8.1 None
ERR1213889 MDR-TB lineage4.3.4.2.1 rw
SAMEA3501073 RR-TB lineage4.8 None
SRR3675552 Other lineage4.9 None
ERR1063890 Sensitive lineage3.1.1 None
ERR4817667 HR-TB lineage4.8 None
SRR6046117 Other lineage4.9 None
ERR4816322 Other lineage4.9 None
ERR4596902 MDR-TB lineage3 None
ERR867575 Other lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
SRR18913742 Sensitive lineage3.1.3 None
ERR190388 Sensitive lineage4.9 None
ERR1465744 Sensitive lineage4.1.2.1 None
SRR3601585 Pre-XDR-TB lineage2.2.1 None
SRR1049676 MDR-TB lineage4.3.3;lineage4.8 None
ERR216965 Sensitive lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
ERR3275709 HR-TB lineage3 nl
SRR7236233 Other La1.8.1 None
ERR4816762 Sensitive lineage4.9 None
SRR6982070 Sensitive lineage2.2.1;lineage4.9 None
ERR4818561 Sensitive lineage4.9 None
SRR7069800 Other lineage3.1.2.1 None
ERR4816745 Pre-XDR-TB lineage2.2.1 None
ERR1063855 Other lineage4.9 None
ERR4798823 HR-TB lineage4 None
SRR20969542 Other lineage4.4.2 None
ERR970449 RR-TB lineage4.1.1.3 None
ERR867554 Other lineage4.3.4.1 None
SRR11342636 MDR-TB lineage4.3.3 None
SRR22424787 Sensitive lineage4.9 None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
ERR4821796 Other lineage4.1.1.1 None
ERR323068 Sensitive lineage4.9 None
ERR2027290 Other lineage3.1.2.1;lineage4.9 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR1173687 Pre-XDR-TB lineage2.2.1 None
ERR3275190 Other lineage3 nl
SRR1173740 Other lineage3;lineage4 None
SRR1180319 Sensitive lineage4.9 None
ERR4815471 HR-TB lineage4.9 None
SRR12708413 HR-TB lineage4.1.1.3 None
ERR4769436 Other La1.3 None
SRR1140716 Other lineage3 None
ERR4821704 Other lineage4.3.3 None
SRR1184308 RR-TB lineage4.9 None
ERR978767 RR-TB lineage4.8 None
SRR1172885 HR-TB lineage4.9 None
ERR4816928 HR-TB lineage1.2.2.2 None
SRR5007161 RR-TB lineage4.1.1.3.1;lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR4818646 Sensitive lineage4.1.2.1 None
SRR9971112 HR-TB lineage2.2.1 None
ERR4816464 Other lineage3 None
ERR867540 MDR-TB lineage2.2.1 None
ERR978766 RR-TB lineage4.8 None
SRR10315556 Sensitive lineage2.2.1 None
ERR867567 RR-TB lineage3 None
SRR1173281 Other lineage3 None
ERR4819462 Sensitive lineage4.9 None
ERR6359069 HR-TB lineage4.9 None
ERR2446154 Sensitive lineage4.4.1.1 nl
ERR978767_ERR978765_ERR978766 RR-TB lineage4.8 None
SRR1173170 Other lineage4.9 None
SRR7240350 Other La1.8.1 None
SRR7535047 RR-TB lineage4.6.1.1 None
ERR2851356 Sensitive lineage4.9 None
ERR137226 MDR-TB lineage2.2.1 None
ERR4769516 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR11342658 RR-TB lineage4.1.2 None
ERR3275615 Sensitive lineage4.4.1.1 nl
SRR4033549 Other lineage2.2.2 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
SRR1184329 Other lineage4.9 None
ERR4814709 Other lineage4.1.1.1 None
ERR752012 HR-TB lineage1.1.1.1 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
SRR8758877 MDR-TB lineage4.1.1.1 None
SRR7240147 Other La1.8.1 None
SRR1140712 MDR-TB lineage4.6.1.2 None
ERR502470 RR-TB lineage4.9 None
ERR736818 Sensitive lineage4.3.3 None
SRR12199468 Sensitive lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR6153231 Sensitive lineage4.4.1.2 None
ERR473323 HR-TB lineage4.9 None
ERR1023509 MDR-TB lineage4.9 None
ERR4817915 Other lineage4.9 None
SRR1173770 Other lineage4.9 None
SRR1062871 RR-TB lineage4.3.4.2.1 None
SRR1196478 Other lineage4.9 None
SRR12708419 Other lineage4.3.3 None
ERR5987263 MDR-TB lineage2.2.1 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
ERR1034647 MDR-TB lineage4.1.1.3 None
SRR7496523 Other lineage4.7 None
ERR867569 Other lineage4.9 None
ERR1035299 MDR-TB lineage4.1.2.1 br
SRR11342662 MDR-TB lineage4.8.1 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR4822261 RR-TB lineage2.2.1 None
ERR216953 Sensitive lineage4.3.4.2.1 None
SRR20632814 Sensitive lineage4.9 None
ERR4819357 Sensitive lineage4.9 None
SRR1180440 Other lineage4.9 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR6359070 Sensitive lineage4.9 None
SRR21240055 Other lineage4.1.2.1 None
SRR1049582 MDR-TB lineage4.6.1.2 None
ERR502481 RR-TB lineage4.9 None
ERR1034907 Pre-XDR-TB lineage4.3.4.1 pt
ERR4816964 HR-TB lineage4.9 None
SRR11342669 Other lineage4.8 None
ERR4815022 Other lineage3.1.2.1 None
ERR10796564 Other lineage4.3.3 None
ERR5162090 RR-TB lineage4.9 None
SRR6982465 Sensitive lineage4.3.4.2 None
SRR6982239 Sensitive lineage4.1.1.3 None
ERR10796633 Other lineage4.3.4.2 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR387051 RR-TB lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR067712 Sensitive lineage4.9 None
ERR228175 Sensitive lineage3 None
ERR2446509 Other lineage3 nl
ERR4818851 RR-TB lineage4.4.1.1 None
ERR4769508 RR-TB lineage4.9 None
SRR11342671 RR-TB lineage4.1.3 None
ERR1034902 Pre-XDR-TB lineage4.3.4.2 pt
ERR4818624 Other lineage4.3.4.2.1 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
SRR11342686 MDR-TB lineage4.8 None
SRR2101529 Sensitive lineage4.3.2.1 None
ERR176781 Sensitive lineage1.1.3.2 None
SRR11342651 MDR-TB lineage4.1.1.1 None
SRR1181351 Sensitive lineage4.9 None
ERR4818126 Other lineage1.2.2 None
SRR1140736 Other lineage4.1.2.1 None
SRR1049674 HR-TB lineage2.2.1 None
ERR6359066 HR-TB lineage4.9 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
ERR4816470 HR-TB lineage3 None
ERR9119733 MDR-TB lineage2.2.1 None
SRR3675582 Other lineage4.9 None
SRR7496471 Sensitive lineage4 None
ERR502473 RR-TB lineage4.9 None
SRR11972188 MDR-TB lineage2.2.1 None
SRR9971270 RR-TB lineage2.2.1 None
SRR6982410 Sensitive lineage4.8.1 None
ERR485006 HR-TB lineage4.9 None
ERR502480 Other lineage5.1.1 None
SRR10993957 Other La1.6 None
ERR171142 Other lineage3.1.1;lineage4.9 None