Run ID: ERR736818
Sample name:
Date: 02-04-2023 04:19:05
Number of reads: 4101233
Percentage reads mapped: 72.01
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472697 | n.852T>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472708 | n.863T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472803 | n.958T>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473147 | n.1302G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473150 | n.1305T>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473161 | n.1316A>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473164 | n.1319C>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473262 | n.1417T>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475869 | n.2212C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476056 | n.2399G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476251 | n.2594T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476353 | n.2696G>A | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476513 | n.2856G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476565 | n.2908G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476566 | n.2909A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476577 | n.2920T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476578 | n.2921C>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476592 | n.2935G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476605 | n.2948C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476608 | n.2951C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476614 | n.2957A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476637 | n.2980C>A | non_coding_transcript_exon_variant | 0.25 |
inhA | 1674748 | p.Gly183Ser | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
Rv2752c | 3065824 | p.Pro123Leu | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245083 | c.1851A>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |