Rv3794 - c.1851A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
1 RR-TB
22 HR-TB
39 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.3.3 | 50 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.6.2.2 | 4 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 5 |
| 3 | |
| M.canetti;lineage2.2 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9 | 8 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 2 |
| lineage1.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| La1.7;lineage4.9 | 3 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7 | 1 |
| lineage4.3.4.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| lineage2.2 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 108 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR29231701 | MDR-TB | lineage4.3.3 | None | ERR736818 | Sensitive | lineage4.3.3 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR29052903 | Sensitive | lineage4.3.3 | None | ERR9117681 | Sensitive | lineage4.3.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR29231862 | MDR-TB | lineage4.3.3 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR736819 | Sensitive | lineage4.3.3 | None | ERR212001 | HR-TB | None | ERR4813863 | MDR-TB | lineage4.3.3 | br | ERR2707100 | MDR-TB | lineage4.3.3 | cd | ERR2706938 | MDR-TB | lineage4.3.3 | cd | ERR2707221 | MDR-TB | lineage4.3.3 | cd | ERR2706967 | MDR-TB | lineage4.3.3 | cd | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR400396 | HR-TB | lineage4.3.3 | gb | ERR2653166 | MDR-TB | lineage4.3.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR28170830 | Sensitive | lineage4.3.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11776027 | MDR-TB | lineage4.3.3 | None | SRR7517781 | MDR-TB | lineage4.3.3 | cd | SRR7517774 | MDR-TB | lineage4.3.3 | cd | ERR3283042 | Other | lineage4.9 | None | SRR29231700 | MDR-TB | lineage4.3.3 | None | ERR387051 | Other | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR7069704 | Sensitive | lineage4.3.3 | None | ERR4011992 | MDR-TB | lineage4.3.3 | None | SRR29231758 | MDR-TB | lineage4.3.3 | None | ERR9786526 | Other | lineage4.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR29231723 | MDR-TB | lineage4.3.3 | None | SRR29093653 | MDR-TB | lineage4.3.3 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR29231555 | MDR-TB | lineage4.3.3 | None | SRR29017325 | Sensitive | lineage4.3.3 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR13284814 | MDR-TB | lineage4.3.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR29231765 | MDR-TB | lineage4.3.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR29230789 | MDR-TB | lineage4.3.3 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR2707219 | MDR-TB | lineage4.3.3 | cd | ERR2707063 | MDR-TB | lineage4.3.3 | cd | ERR2707228 | MDR-TB | lineage4.3.3 | cd | ERR2432991 | HR-TB | lineage4.3.3 | br | SRR29230998 | MDR-TB | lineage4.3.3 | None | SRR14164832 | Sensitive | lineage4.3.3 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR323112 | Sensitive | lineage4.3.3 | mw | SRR1180137 | Other | lineage2.2.1 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR11082363 | MDR-TB | lineage4.3.3 | None | ERR4830353 | Other | La1.7 | None | SRR29094092 | MDR-TB | lineage4.3.3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR10969250 | HR-TB | lineage4.3.3 | None | SRR19320523 | Sensitive | lineage4.3.3 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR29050859 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR11465801 | Other | lineage4.3.4.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR11641179 | Sensitive | lineage4.3.3 | None | SRR3732718 | MDR-TB | lineage4.3.3 | None | ERR176751 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR9786843 | Other | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR2707098 | MDR-TB | lineage4.3.3 | cd | ERR2707173 | MDR-TB | lineage4.3.3 | cd | ERR2707007 | MDR-TB | lineage4.3.3 | cd | ERR2707115 | MDR-TB | lineage4.3.3 | cd | SRR29096366 | MDR-TB | lineage4.3.3 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR2653049 | Sensitive | lineage4.3.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR2653022 | Sensitive | lineage4.3.3 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR29231702 | MDR-TB | lineage4.3.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR29231677 | MDR-TB | lineage4.3.3 | None |
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