Rv3596c - c.1764G>C
Drug resistance types
78 Sensitive
7 RR-TB
99 HR-TB
12 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
120 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 183 |
| La1.8.1 | 4 |
| La1;lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 5 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.4.1.2 | 1 |
| La1.4 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage2.2.1 | 15 |
| La1.2.BCG | 2 |
| lineage1.1.3.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1;lineage4.9 | 4 |
| M.canetti;lineage4.9 | 2 |
| lineage4.1.1.2 | 1 |
| lineage3.1.3 | 2 |
| lineage4.3.3 | 1 |
| La3;lineage4.9 | 8 |
| La1.7;lineage4.9 | 9 |
| lineage3 | 6 |
| lineage1.1.1 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.8 | 5 |
| lineage1;lineage4.9 | 2 |
| lineage4.5 | 3 |
| lineage4.1.2.1 | 7 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4.2.1 | 2 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.6.2.2 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| La3;lineage4 | 1 |
| 2 | |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.3.4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.4.2 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.2.1.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage3;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage6.1.3 | 2 |
| lineage4 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.2.1 | 1 |
| La1.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 321 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR19295647 | HR-TB | lineage4.9 | None | SRR7236330 | Other | La1.8.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR16278274 | Other | La1.4 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR363500 | Other | lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR926155 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR5341456 | Other | lineage4.9 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | SRR6045359 | HR-TB | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR13861551 | Sensitive | lineage4.9 | None | ERR349300 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR13861522 | Other | lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4818252 | HR-TB | lineage4.1.1.2 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4769493 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR4816964 | HR-TB | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | ERR736848 | Other | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR4799025 | Other | lineage4.8 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR4811031 | Other | lineage4.5 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR6044875 | Other | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR363453 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR13837447 | Sensitive | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR6045503 | Other | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR13837446 | Sensitive | lineage4.9 | None | ERR1063896 | HR-TB | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR3675441 | RR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR7535082 | Other | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR4815471 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675246 | Other | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR12708416 | Sensitive | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR752229 | Other | lineage4.5 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR363499 | Other | lineage4.9 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR9786076 | Other | lineage3 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR13837559 | Sensitive | lineage4.9 | None | ERR926165 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4816762 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR7236177 | Other | La1.8.1 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR3797063 | Other | La3;lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR13837558 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR400326 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | SRR3675585 | HR-TB | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR4796254 | Other | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None |
|---|
