EBG00000313339 - n.2450delA
Drug resistance types
66 Sensitive
29 RR-TB
27 HR-TB
26 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
98 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.1.1 | 1 |
| lineage4.8 | 13 |
| lineage4 | 19 |
| lineage4.9 | 88 |
| lineage4.4.1.1 | 4 |
| lineage4.1.2.1 | 11 |
| lineage2.2.1 | 19 |
| lineage3 | 22 |
| lineage4.6.2.2 | 2 |
| lineage6 | 1 |
| lineage4.4.1.1.1 | 3 |
| lineage4.3.4.2.1 | 6 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.8.1 | 6 |
| 7 | |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 1 |
| lineage2 | 2 |
| La2 | 1 |
| lineage4.4.2 | 1 |
| La1.4 | 1 |
| lineage2.2.2 | 3 |
| lineage2.2.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage3.1.3 | 2 |
| lineage1.1.1 | 3 |
| lineage4.5 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.3.3 | 4 |
| lineage4.1.1.3 | 3 |
| lineage3.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.1.1 | 2 |
| lineage1.1.2 | 3 |
| lineage4;lineage2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.2.1 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage5.1.2 | 1 |
| lineage4.7 | 1 |
| lineage4.8.1 | 1 |
| La1.3 | 9 |
| lineage4.9;La1.3 | 3 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 262 |
Geographic prevalence
Country level data for this variant is available for 15 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR5908124 | Other | lineage4.8 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736837 | Other | lineage4.9 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | ERR9119120 | Other | lineage4.8 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR9786705 | Sensitive | lineage4.1.2.1 | None | ERR9787336 | Other | lineage6 | None | SRR10315641 | MDR-TB | lineage4.4.1.1.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR13180205 | Sensitive | lineage4.1.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR12199485 | Other | lineage2 | None | SRR13180204 | Sensitive | lineage3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20632814 | Sensitive | lineage4 | None | SRR2100537 | Sensitive | lineage3 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR2100532 | Sensitive | lineage3 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR21677870 | Sensitive | None | SRR21727728 | Sensitive | lineage4.4.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR21713567 | Sensitive | lineage4.5 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22175229 | MDR-TB | lineage4.2.2.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4815310 | Other | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4 | None | ERR1750892 | Sensitive | lineage3 | zw | ERR4815471 | Other | lineage4.9 | None | ERR1750907 | RR-TB | None | ERR1750922 | Sensitive | lineage4.1.1.3 | za | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR1750926 | Other | lineage4.3.2.1 | za | ERR4815550 | Other | lineage4 | None | ERR4814976 | Other | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | ERR2027220 | Other | lineage3.1.3 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816470 | Other | lineage3 | None | ERR4816322 | Other | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR3275709 | HR-TB | lineage3 | nl | ERR4816548 | MDR-TB | lineage4.5 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816711 | Sensitive | lineage4.1.1 | gb | ERR4816571 | Other | lineage1.1.2 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817434 | Other | lineage3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4815815 | Sensitive | lineage4 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR228175 | Sensitive | lineage3 | None | ERR228180 | Sensitive | lineage3 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR2512599 | Other | lineage3 | gb | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR2513259 | Other | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4819357 | Other | lineage4.9 | None | ERR4820290 | Other | lineage3 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR4820484 | Other | lineage4.8 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR2514926 | Other | lineage4.6.2.2 | gb | ERR4820030 | Other | lineage4.9 | None | ERR4820130 | Other | lineage3 | None | ERR4819933 | Other | lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045480 | Other | lineage4.1.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045642 | Other | lineage3.1.2.2 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR3275190 | Other | lineage3 | nl | SRR6982471 | Sensitive | lineage2.2.1 | None | ERR5087855 | Other | La1.8.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR8600288 | Other | La1.8.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7131076 | Sensitive | lineage5.1.2 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR067712 | HR-TB | lineage4 | None | DRR185024 | Other | lineage2.2.2 | None | ERR10796597 | Other | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR10762291 | MDR-TB | lineage2.2.1 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3439441 | Other | La1.8.1 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769404 | Other | La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769472 | Other | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769512 | Sensitive | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769495 | Other | La1.3 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769548 | Other | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769555 | Other | La1.3 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4796577 | MDR-TB | None | ERR4799908 | Pre-XDR-TB | lineage3 | in | ERR4798823 | HR-TB | lineage4 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811708 | HR-TB | lineage4 | None |
|---|
