EBG00000313339 - n.1514C>T
Drug resistance types
13 Sensitive
31 RR-TB
10 HR-TB
14 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
159 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 22 |
| lineage4.1.2.1 | 32 |
| lineage2.2.1 | 23 |
| lineage2.2.1.1 | 1 |
| lineage1.1.2 | 5 |
| lineage3 | 23 |
| lineage4.3.2 | 5 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.9 | 22 |
| lineage4.3.3 | 11 |
| lineage4.3.4.1 | 3 |
| lineage4.6 | 2 |
| lineage4.3.4 | 2 |
| lineage4 | 12 |
| lineage4.1.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3 | 1 |
| lineage4.8.1 | 2 |
| La1.4 | 1 |
| La1.8.1 | 2 |
| lineage4.2.2 | 2 |
| lineage1.1.1 | 2 |
| 6 | |
| lineage1.1.3.1 | 5 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.6.5 | 1 |
| lineage4.7 | 3 |
| lineage4.1 | 2 |
| lineage3.1.2.1 | 2 |
| lineage1.2.1.1 | 3 |
| lineage5 | 1 |
| lineage4.2.1 | 1 |
| lineage4.2.2.1 | 1 |
| lineage4.5 | 1 |
| lineage3.1.1 | 3 |
| lineage2.2 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.6.2.2 | 4 |
| lineage6 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.3.2.1 | 2 |
| lineage4.8.2 | 3 |
| lineage4.3.4.2.1 | 2 |
| lineage4;lineage3.1.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1.1.3 | 1 |
| lineage4.1.3 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.3.1.1 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage1.2.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 237 |
Geographic prevalence
Country level data for this variant is available for 38 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7131123 | Other | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9217359 | MDR-TB | lineage1.1.2 | None | ERR019855 | Other | lineage3 | None | ERR017781 | Other | lineage3 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796597 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796592 | Other | lineage4 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796627 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796635 | Other | lineage4 | None | ERR4769429 | Other | lineage4.9 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9030303 | MDR-TB | lineage1.1.2 | None | SRR1163079 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR1791940 | Other | La1.8.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22048374 | Sensitive | lineage4.8 | None | SRR21658550 | Other | lineage1.1.1 | None | ERR4814623 | Other | lineage4.8 | None | ERR4815618 | Other | lineage4.8 | None | ERR4815310 | Other | None | ERR4815784 | Other | lineage2.2.1 | gb | ERR4815640 | Other | lineage3 | gb | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814789 | Other | lineage3 | gb | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4814783 | Other | lineage4.7 | None | ERR4815452 | Other | lineage4.3.3 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4815550 | Other | lineage4 | None | ERR4815502 | Other | lineage4.1 | None | ERR4814976 | Other | lineage4.9 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4816951 | HR-TB | lineage4.1.2.1 | gb | ERR2228965 | Other | lineage4.8 | None | ERR4816943 | Sensitive | lineage4.3.3 | gb | ERR4815898 | Other | lineage3 | None | ERR4816068 | HR-TB | lineage1.2.1.1 | gb | ERR4816967 | RR-TB | lineage5 | None | ERR4816968 | Other | lineage4.2.1 | gb | SRR3675527 | RR-TB | lineage4.9 | None | ERR4815909 | Other | lineage4.8 | None | ERR4815956 | Other | lineage1.1.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR4817060 | RR-TB | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR4817047 | Other | lineage4.2.2.1 | gb | ERR4816232 | Other | lineage4 | None | ERR4816270 | Other | lineage4.1.2.1 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816300 | Other | lineage4.1.2.1 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4816322 | Other | lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | ERR4816464 | Other | lineage3 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816561 | Sensitive | lineage3 | gb | ERR4817398 | Other | lineage3.1.1 | None | ERR4816699 | Other | lineage4.6 | None | ERR4816627 | Other | lineage2.2 | None | ERR4816688 | Other | lineage4.2.2.2 | gb | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817194 | Other | lineage4.1.2.1 | None | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4816756 | RR-TB | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR4818691 | Other | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR2228810 | RR-TB | lineage4 | None | ERR4817853 | Other | lineage4.8.1 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4817874 | Other | lineage3 | None | ERR4817895 | Other | lineage4.1.2.1 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4818831 | Other | lineage3 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818180 | Other | lineage4.8 | gb | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4819073 | Other | lineage4.1.2.1 | None | ERR4818219 | Other | lineage4.3.2.1 | gb | ERR4818407 | Other | lineage4.3.2 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR4818548 | Other | lineage4.3.3 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR2513298 | Other | lineage4.8 | gb | ERR4819131 | Other | lineage4 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4819166 | Other | lineage3 | gb | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR4819198 | Other | lineage2.2.1 | None | ERR4819192 | Other | lineage3 | None | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR2513814 | Sensitive | lineage4.3.4.1 | gb | ERR4820290 | Other | lineage3 | None | ERR4820256 | Other | lineage2.2.1 | None | ERR4819307 | RR-TB | lineage4 | None | ERR4819324 | Other | lineage4.8 | gb | ERR4819310 | Sensitive | lineage4.1.2.1 | gb | ERR4820736 | Other | lineage4.1.2.1 | gb | ERR4819377 | Other | lineage4;lineage3.1.2.1 | None | ERR4819497 | Sensitive | lineage4.4.1.2 | gb | ERR4820324 | Other | lineage4 | None | ERR4819476 | Sensitive | lineage4.3.2 | None | ERR4820348 | Other | lineage4.1.2.1 | None | ERR4820404 | Other | lineage4.3.2 | None | ERR2514261 | Other | lineage3 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR2514409 | Sensitive | lineage3 | gb | ERR4819699 | HR-TB | lineage4.6.2.2 | gb | ERR4820891 | Other | lineage4.9 | gb | ERR4820484 | Other | lineage4.8 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR2515077 | Sensitive | lineage3 | gb | ERR4820820 | Other | lineage1.2.1.1 | gb | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820833 | HR-TB | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819842 | Other | lineage4.1.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR2514943 | Other | lineage4.8 | gb | ERR2515032 | Other | lineage3 | None | ERR2515093 | Other | lineage4.8.2 | gb | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820107 | RR-TB | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820939 | Sensitive | lineage4.2.2.2 | gb | ERR4820922 | Other | lineage4.1.2.1 | gb | ERR4821828 | Other | lineage4.1.2.1 | gb | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4821167 | Other | lineage4.8 | gb | SRR6045516 | Other | lineage3.1.1 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4821264 | Other | lineage1.1.3 | None | ERR4821214 | RR-TB | None | ERR4821519 | Other | lineage3 | gb | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4822114 | Other | lineage4.1.2.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821325 | Other | lineage3 | None | ERR4822105 | Other | lineage4.1 | None | ERR4822170 | Other | lineage4.1.1.3 | None | ERR4821543 | Other | lineage4.3.2.1 | gb | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821761 | Other | lineage3 | gb | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6044841 | Other | lineage4.9 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045909 | Other | lineage4.8 | None | SRR6045124 | Other | lineage4.9 | None | SRR6046456 | Other | lineage4.1.1.3.1 | None | ERR4829881 | MDR-TB | lineage1.1.2 | it | ERR4829835 | HR-TB | lineage4.8 | it | SRR6046250 | Other | lineage4.9 | None | SRR6046359 | Other | lineage4.7 | None | ERR4828327 | Other | lineage1.2.1.2.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6046710 | Other | lineage4.8.2 | None | SRR6046815 | Other | lineage3 | None | SRR6187068 | Sensitive | lineage4.7 | None | SRR6982102 | Other | lineage2.2.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR7131068 | Other | lineage4.8 | None | SRR8073606 | Other | La1.8.1 | None |
|---|
