EBG00000313339 - n.89T>C
Drug resistance types
143 Sensitive
3 RR-TB
68 HR-TB
14 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
89 Other
lineage Counts
| lineage | Count |
|---|---|
| 57 | |
| lineage4.9 | 69 |
| lineage4.1.2.1 | 11 |
| lineage4.1.3 | 1 |
| lineage4 | 104 |
| lineage2.2.1 | 15 |
| lineage4.2.1 | 3 |
| lineage2.1 | 2 |
| lineage5.2 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.5;lineage2.2 | 1 |
| lineage4.6.2.2 | 7 |
| lineage4.1 | 3 |
| lineage4.8 | 2 |
| lineage4.1.2 | 3 |
| lineage4.3.2.1 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.3.3 | 1 |
| La1.2 | 2 |
| La1 | 1 |
| La1.8.1 | 7 |
| lineage4;lineage3.1 | 1 |
| lineage1.1.2 | 2 |
| lineage2.2.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.5 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.1.1.3 | 3 |
| La2 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage3 | 6 |
| lineage4;lineage2.2 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage3.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| La3 | 1 |
| lineage5.1.4 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 328 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4821263 | Other | lineage4.1.3 | gb | ERR4821655 | Sensitive | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044918 | Sensitive | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045158 | Other | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046492 | Other | None | SRR6046802 | Other | lineage4 | None | ERR4831117 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6511621 | HR-TB | None | ERR4832052 | HR-TB | lineage2.1 | vn | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831787 | HR-TB | lineage4.4.2 | vn | ERR4831638 | Sensitive | None | ERR4831763 | HR-TB | lineage4.5;lineage2.2 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502943 | HR-TB | None | SRR9613540 | Sensitive | lineage4.6.2.2 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR323107 | Other | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7851312 | Other | La1.2 | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3445504 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1063883 | Sensitive | lineage4 | None | ERR1213935 | Other | lineage4.1.2.1 | pe | ERR133825 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283025 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797068 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR400326 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4798431 | HR-TB | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR6865502 | Sensitive | lineage4 | None | ERR4812155 | Sensitive | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR6866639 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR9119669 | HR-TB | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR11444077 | Sensitive | lineage4.6.2.2 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13888768 | Sensitive | La2 | None | SRR16096991 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR8692885 | Other | lineage4.9 | None | SRR22424739 | Pre-XDR-TB | lineage3 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692782 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692878 | Other | lineage4.9 | None | SRR8692894 | Other | lineage4.9 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692844 | Other | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR8692832 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692899 | Other | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4815310 | Other | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675229 | Other | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675265 | Other | lineage4 | None | SRR3675279 | Other | None | ERR4815550 | Other | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | ERR4814963 | Other | lineage4.1.2.1 | None | ERR4814976 | Other | lineage4.9 | None | SRR3675456 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816110 | Sensitive | lineage4.9 | gb | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | None | ERR4817488 | Other | lineage4.3.4.2.1 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR4818999 | Sensitive | lineage4.9 | None | ERR4817948 | Other | lineage3 | gb | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818222 | Sensitive | La3 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818873 | Other | lineage4.1.2 | gb | ERR2513283 | Other | lineage5.1.4 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR2503533 | Other | lineage4.1.2.1 | fi | SRR5341453 | Sensitive | None | SRR5341396 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4820290 | Other | lineage3 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819423 | Other | lineage4.6.2.2 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | SRR5341425 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341456 | Other | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341300 | Other | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR2514692 | Other | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR2446382 | Other | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5431730 | Other | La1.8.1 | None | SRR5341469 | Other | lineage4 | None | ERR2517475 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045460 | Sensitive | lineage3 | gb | SRR6045495 | Sensitive | lineage1.2.2.2 | gb |
|---|
