EBG00000313339 - n.89T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
125 Sensitive
1 RR-TB
41 HR-TB
9 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 148 |
| lineage4.1.1.3 | 4 |
| lineage4.5 | 2 |
| 3 | |
| lineage2.1;lineage4.9 | 2 |
| lineage2.2.1 | 14 |
| La1.7;lineage4.9 | 4 |
| lineage3.1.3 | 1 |
| La3;lineage4.9 | 7 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.4.1.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage1.1.2 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.3 | 1 |
| La1;lineage4.9 | 3 |
| lineage4.3.3 | 2 |
| lineage4.8 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.1.2.1 | 4 |
| lineage2.2.1;lineage4 | 1 |
| La1.8.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.1.2 | 2 |
| lineage3;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;lineage4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage5.2 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage3 | 1 |
| lineage1.1.3.1 | 1 |
| La1.2 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 243 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR369158 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | SRR8692887 | Other | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR11444077 | Sensitive | lineage4.6.2.2 | None | ERR751326 | Other | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR8692812 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR369151 | Other | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR6358979 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SRR11662694 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR1159378 | Other | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | SRR3675582 | Other | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR6046802 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR363502 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7851312 | Other | La1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1173568 | Sensitive | lineage4.9 | None |
|---|
