EBG00000313339 - n.89T>C


Drug resistance types
63 Sensitive 3 RR-TB 63 HR-TB 15 MDR-TB 7 Pre-XDR-TB 0 XDR-TB 81 Other
lineage Counts
lineage Count
lineage4.9 140
lineage3.1.2.1 1
lineage2.2.1 13
lineage2.2;lineage4.9 1
La1;lineage2;lineage4.9 1
lineage5.2 2
lineage2.1;lineage4.9 2
lineage4.9;lineage6.1.3 1
La3;lineage4.9 7
lineage4.1.1.3 4
La1.7;lineage4.9 3
lineage4.3.3 2
lineage4.3.1;lineage4.9;lineage6 1
lineage4.3.4.2.1 2
La3;lineage4 1
3
La1;lineage4.9 3
lineage4.1.1.1 1
lineage4.2.1.1;lineage4.3.3 1
lineage4.3.2.1 2
lineage2.2.1.2 1
lineage1.1.2 2
La1.7;lineage3.1;lineage4 1
lineage2.2.1.2;lineage7 1
lineage4.4.1.1 1
lineage4.1;lineage4.9 2
lineage4.4.1.2 1
lineage3;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
lineage1.1.1;lineage4 1
lineage4.1.1.3;lineage4.9 2
lineage5.1.4 1
lineage4.6.2.2 2
lineage4.1.2.1 4
lineage2.1;lineage4.9;lineage7 1
lineage3.1.3 1
lineage4.8;lineage4.9 2
lineage4.9;lineage7 2
La1.8.1 1
lineage4.5 2
lineage4 1
lineage4.2.1 1
lineage4.2;lineage4.6.3;lineage4.9 1
La1;lineage4.1.2 1
La1.2 1
lineage2.2.1;lineage4.9 1
lineage3 1
lineage1.1.3.1 1
La1.7;lineage4.9;lineage6 1
lineage2.2.1;lineage4 1
lineage4.1.2 1
spoligotype Counts
spoligotype Count
None 232
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR363474 Sensitive lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR4800102 Sensitive lineage3.1.2.1 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR12142339 HR-TB lineage2.2.1 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4799547 HR-TB lineage2.2.1 None
SRR5341300 HR-TB lineage4.9 None
ERR369163 Other lineage4.9 None
ERR4815550 Other lineage2.2;lineage4.9 None
ERR369161 Sensitive lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
ERR9119483 Pre-XDR-TB lineage5.2 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR6046897 Sensitive lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR3797063 Other La3;lineage4.9 None
SRR1175508 Sensitive lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR349299 Other lineage4.9 None
ERR400326 Other lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR4814976 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR3797081 Sensitive lineage4.9 None
SRR12708409 HR-TB lineage4.3.3 None
SRR5341453 Other lineage4.9 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR4797184 HR-TB lineage4.9 None
SRR1158918 Other lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR373947 Other lineage4.9 None
SRR5341467 Other lineage4.9 None
SRR1173777 Sensitive lineage4.9 None
SRR3675266 Sensitive lineage4.9 None
SRR1167271 MDR-TB lineage4.1.1.3 None
ERR502510 HR-TB lineage4.9 None
SRR3675260 Sensitive lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR3675209 Sensitive lineage4.9 None
ERR349266 Other lineage4.9 None
ERR11465333 Sensitive lineage4.3.4.2.1 None
ERR736856 HR-TB lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR363456 Sensitive lineage4.9 None
SRR12708416 Sensitive None
ERR349300 Other lineage4.9 None
ERR137286 Other lineage4.9 None
ERR6358979 HR-TB lineage4.9 None
ERR4816852 Other lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR4816113 Sensitive lineage4.1.1.1 None
ERR363449 Other lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR2513724 Sensitive lineage4.3.2.1 None
ERR369157 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
SRR5341298 Other lineage4.9 None
ERR363499 Other lineage4.9 None
ERR369151 Other lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR1159378 Other lineage4.9 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
ERR6866410 HR-TB lineage4.9 None
ERR3283031 Other La3;lineage4.9 None
ERR363506 Sensitive lineage4.9 None
SRR3675210 Sensitive lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR216965 Sensitive lineage4.9 None
ERR9119669 MDR-TB lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR363426 Sensitive lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
SRR5341310 Other lineage1.1.2 None
SRR1049674 HR-TB lineage2.2.1 None
SRR14801749 HR-TB lineage4.9 None
ERR349330 Sensitive lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR124636 HR-TB lineage4.9 None
SRR3675548 Sensitive lineage4.9 None
SRR3675582 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR349264 Other lineage4.9 None
SRR3675318 Other lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
ERR323062 HR-TB lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR363498 Other lineage4.9 None
ERR751326 Other lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
SRR6045706 Other lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR4797193 HR-TB lineage1.1.2 None
SRR8692812 Sensitive lineage4.9 None
SRR10808399 Sensitive lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
SRR5341296 Sensitive lineage4.9 None
ERR3283014 Other La3;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
ERR363490 Other lineage4.9 None
ERR4812155 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR363502 Other lineage4.9 None
ERR363509 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
SRR3675514 Sensitive lineage4.9 None
ERR363447 Other lineage4.9 None
ERR369156 Sensitive lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR4798431 Other lineage4.1;lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR5341396 Other lineage3;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR3675542 Other lineage4.9 None
ERR2513283 Sensitive lineage5.1.4 None
SRR6045503 Other lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR363446 Other lineage4.9 None
SRR8692887 Other None
ERR9786597 Other lineage4.6.2.2 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR3806850 HR-TB lineage4.1.2.1 None
SRR11444077 Sensitive lineage4.6.2.2 None
SRR9971114 Other lineage2.2.1 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
ERR2513121 Sensitive lineage3.1.3 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
ERR9786911 HR-TB lineage4.1.2.1 None
SRR10808668 Other lineage2.2.1 None
ERR363421 Other lineage4.9 None
SRR6046492 Other lineage4.9 None
ERR349296 Sensitive lineage4.9 None
SRR1791747 Other La1.8.1 None
ERR3797015 HR-TB lineage4.9 None
SRR3675473 Sensitive lineage4.9 None
ERR387051 RR-TB lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR6046564 Sensitive lineage4.9 None
ERR349265 Other lineage4.9 None
ERR373946 Other lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR400345 Other lineage4.9 None
ERR323066 HR-TB lineage4.9 None
SRR11662694 Other lineage4.9 None
ERR4811031 Other lineage4.5 None
ERR400336 Sensitive lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR1180996 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR3273109 HR-TB lineage4 None
SRR5341387 Other lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
SRR9613550 HR-TB lineage4.1.2.1 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR3797064 Other La3;lineage4.9 None
ERR4814396 Sensitive lineage4.1.1.3 None
SRR12416842 HR-TB lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR363453 Other lineage4.9 None
SRR5341455 Sensitive lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR3797086 Sensitive lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR4872077 Pre-XDR-TB lineage5.2 None
SRR7851312 Other La1.2 None
ERR4815310 Other lineage2.2.1;lineage4.9 None
ERR363500 Other lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR363479 Other lineage4.9 None
ERR369159 Other lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR1063896 HR-TB None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR752229 Other lineage4.5 None
ERR369162 Other lineage4.9 None
SRR1049675 HR-TB lineage2.2.1 None
SRR1173568 Sensitive lineage4.9 None
ERR4797474 Other lineage4.9 None
SRR6046611 Sensitive lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
SRR1165306 Pre-XDR-TB lineage4.1.1.3 None
ERR736872 HR-TB lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
ERR373945 Other lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR369158 Other lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
ERR702405 HR-TB lineage4.9 None
ERR3797079 Sensitive lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR9970980 HR-TB lineage4.1.2 None