Rv1630 - c.654G>C
Drug resistance types
20 Sensitive
40 RR-TB
167 HR-TB
29 MDR-TB
18 Pre-XDR-TB
0 XDR-TB
157 Other
lineage Counts
| lineage | Count |
|---|---|
| 166 | |
| lineage4.3.3 | 10 |
| lineage4.9 | 57 |
| lineage2.2.1 | 29 |
| La1.4 | 1 |
| lineage2.1 | 2 |
| lineage4.5 | 2 |
| lineage2.2.1.1 | 2 |
| La1.8.1 | 2 |
| La1.7.1 | 1 |
| lineage2.2 | 6 |
| lineage2 | 3 |
| lineage4.8 | 8 |
| lineage1.1.2 | 3 |
| lineage1.2.2 | 1 |
| lineage4.1 | 1 |
| lineage4.1.1 | 4 |
| lineage4.4.1.1 | 4 |
| lineage4 | 20 |
| lineage3.1.2 | 2 |
| lineage4.1.2.1 | 24 |
| lineage1.1.3.1 | 3 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3 | 1 |
| lineage3.1.2.1 | 3 |
| lineage3 | 11 |
| lineage5 | 2 |
| lineage3.1 | 5 |
| lineage1.1.3 | 1 |
| La1.8.2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.8;La3 | 1 |
| lineage2.2.2 | 2 |
| lineage1 | 1 |
| lineage6 | 3 |
| lineage4.1.1.3.1 | 1 |
| lineage4.8.2 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.3.4.1 | 3 |
| lineage4;lineage1.1 | 1 |
| lineage4.6.2.2 | 4 |
| lineage3.1.1 | 1 |
| lineage4.7 | 3 |
| lineage4.1.3 | 3 |
| lineage4.3.1 | 1 |
| lineage5.2 | 2 |
| lineage1.1 | 1 |
| La2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.2 | 3 |
| lineage4.4.1.2 | 1 |
| La1 | 1 |
| lineage6.1.1 | 2 |
| lineage4.9;La1.3 | 1 |
| La1.3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.2.1 | 1 |
| lineage6.3.1 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| La3 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 431 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR1640750 | HR-TB | None | SRR16156775 | Other | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16278274 | Other | La1.4 | None | SRR16370251 | Sensitive | None | SRR1710057 | Other | lineage2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR19451491 | Sensitive | None | ERR4815604 | HR-TB | None | ERR11081258 | Other | lineage4.8 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | SRR6325445 | HR-TB | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675465 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR1035239 | HR-TB | None | ERR4815772 | Other | lineage4.4.1.1 | None | ERR4814312 | Other | lineage4 | None | ERR158583 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR4815777 | Other | lineage4.9 | None | ERR4815310 | Other | None | SRR3675486 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR3675222 | Other | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4814617 | Other | lineage1.1.3.1 | None | SRR3675221 | HR-TB | None | ERR4814700 | Other | lineage4.3.3 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675501 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR176568 | Other | lineage4.3 | None | SRR3675383 | HR-TB | None | ERR4815550 | Other | lineage4 | None | ERR4814976 | Other | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | ERR4814911 | Other | lineage4.3.3 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR176740 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | ERR4815079 | RR-TB | lineage3 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675502 | Other | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4815901 | Other | lineage2.2 | None | ERR4816999 | Other | None | ERR4816967 | RR-TB | lineage5 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027263 | Other | lineage4 | None | SRR3675545 | HR-TB | None | ERR4816093 | Other | lineage1.1.3 | None | ERR4816133 | Other | La1.8.2 | None | ERR212033 | HR-TB | None | SRR3675550 | Other | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4817060 | RR-TB | None | ERR4816322 | Other | lineage4.9 | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4817131 | Pre-XDR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816656 | HR-TB | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816756 | RR-TB | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4816425 | Other | lineage2.2.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4819017 | RR-TB | lineage3 | None | SRR7496472 | Other | None | ERR4819012 | Other | lineage1.1.2 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR1035162 | Other | None | ERR234659 | HR-TB | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818173 | Other | lineage2.2.1 | None | ERR4818929 | HR-TB | None | ERR4818393 | RR-TB | lineage3 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4820265 | Other | lineage4.1.2.1 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4820266 | RR-TB | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4820324 | Other | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341418 | Other | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819724 | Other | lineage4.9 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4820833 | HR-TB | None | ERR2514692 | Other | None | ERR1023509 | Other | None | ERR4819932 | Other | lineage4.7 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR5341302 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341315 | Sensitive | None | ERR4820161 | Other | lineage3 | None | SRR5341333 | HR-TB | None | ERR4820107 | RR-TB | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821799 | Other | lineage2.2.1 | None | ERR4821176 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | SRR6045503 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | ERR4821214 | RR-TB | None | ERR4821288 | Other | lineage4.7 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821310 | Other | lineage5 | None | ERR4821409 | Other | lineage4.8 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6044790 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6046133 | HR-TB | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6044855 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045957 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046250 | Other | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046482 | HR-TB | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | ERR4830353 | Other | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6789626 | Other | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR323036 | HR-TB | None | ERR502889 | Other | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7496509 | Other | None | ERR323038 | HR-TB | None | SRR7535086 | Other | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR067681 | HR-TB | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR10796589 | Other | lineage4.9 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796586 | Other | lineage4.9 | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796634 | Other | lineage4 | None | ERR11049020 | Other | lineage4.8 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283010 | Other | La1 | None | ERR133986 | HR-TB | None | ERR3283008 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3439432 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797069 | Other | None | ERR3797083 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4407463 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4188350 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR403298 | HR-TB | lineage4 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798406 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4811142 | MDR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR5336148 | Other | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736865 | HR-TB | None | ERR702404 | HR-TB | None | ERR736835 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR9117709 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | ERR9787336 | Other | lineage6 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987722 | HR-TB | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1173118 | Other | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173400 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173310 | MDR-TB | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173740 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1174897 | HR-TB | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1175049 | RR-TB | None | SRR1184294 | HR-TB | None | SRR1181161 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196494 | MDR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142341 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837488 | Sensitive | lineage4.9 | None | SRR13837709 | Sensitive | lineage4.9 | None | SRR13861241 | HR-TB | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None |
|---|
