Rv3596c - c.1815G>A
Drug resistance types
137 Sensitive
10 RR-TB
57 HR-TB
12 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
81 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 63 |
| lineage4 | 92 |
| 52 | |
| lineage4.6.2.2 | 3 |
| La1.3 | 5 |
| lineage4;lineage3.1 | 1 |
| lineage4.1.2.1 | 5 |
| La1.2 | 2 |
| lineage4.9;La1.3 | 1 |
| lineage1.1.2 | 3 |
| lineage2.2.1 | 21 |
| lineage4.5 | 1 |
| lineage1.1.3.1 | 1 |
| lineage6.1.3 | 1 |
| lineage4.8 | 6 |
| La3 | 1 |
| lineage2.2.1.1 | 5 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2 | 1 |
| lineage2 | 1 |
| lineage1.1.1 | 1 |
| La1.4 | 1 |
| lineage4.2.1 | 3 |
| La1.8.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.3 | 2 |
| lineage4;lineage2.2 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage2.1 | 2 |
| lineage1.2.1.1 | 1 |
| lineage4.4.1 | 1 |
| lineage4.1.2 | 3 |
| lineage3.1.2.1 | 1 |
| lineage3 | 5 |
| lineage4.1.1.2 | 1 |
| lineage4.1 | 2 |
| lineage3.1.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.8.1 | 1 |
| La1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 303 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR349266 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR4024991 | Other | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4769408 | Other | La1.3 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769514 | Other | La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769516 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798431 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6198317 | Other | La1.2 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6866410 | Sensitive | None | ERR6359045 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866022 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6866639 | Other | None | ERR752229 | Other | lineage4.5 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR9119669 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR10808805 | Sensitive | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1173777 | Other | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR14801749 | Sensitive | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR11972207 | Sensitive | lineage1.1.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR16278274 | Other | La1.4 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR1791747 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR11081388 | MDR-TB | lineage4.3 | None | SRR8692825 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692899 | Other | lineage4.9 | None | ERR4815660 | Sensitive | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675488 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675222 | Other | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR1750943 | Sensitive | lineage4 | None | ERR1750907 | RR-TB | None | SRR3675265 | Other | lineage4 | None | ERR1750938 | Other | lineage4.4.1 | None | ERR1750944 | Other | lineage4.1.2 | za | SRR3675246 | Sensitive | lineage4 | None | ERR176568 | Other | lineage4.3 | None | SRR3675270 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675501 | HR-TB | None | ERR4814976 | Other | lineage4.9 | None | ERR176643 | HR-TB | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR212034 | HR-TB | None | ERR212033 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | ERR4816852 | Other | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4817204 | RR-TB | lineage4.9 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818086 | Sensitive | lineage4.8 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341425 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819051 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341467 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341456 | Other | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045519 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045480 | Other | lineage4.1.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045503 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045086 | Other | lineage3 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045233 | HR-TB | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6046046 | Other | None | SRR6046250 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046802 | Other | lineage4 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046492 | Other | None | SRR6046644 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | SRR6511621 | HR-TB | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6981961 | Sensitive | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | None | SRR7496471 | Sensitive | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323107 | Other | lineage4 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1034634 | HR-TB | None | ERR036207 | Other | lineage4.9 | None | ERR067699 | HR-TB | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None |
|---|
