Rv0668 - c.-453C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
6 RR-TB
36 HR-TB
12 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
50 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 40 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.3.3 | 4 |
| 2 | |
| La2;lineage4.9 | 1 |
| lineage2.2.1 | 9 |
| lineage4.9;lineage9 | 2 |
| lineage5 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage3 | 6 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.2.2 | 1 |
| lineage4.1.3 | 2 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.3.4.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.8 | 2 |
| lineage1.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage4.1.2.1 | 6 |
| lineage1.2.2.2 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.6.5 | 1 |
| lineage1 | 1 |
| lineage4 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 118 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5311094 | HR-TB | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR987722 | MDR-TB | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR10796589 | Other | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR181887 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR4816967 | Other | lineage5 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR4818831 | Other | lineage3 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR4821288 | Other | lineage4.7 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR3797080 | Sensitive | lineage4.9 | None | ERR4819017 | Other | lineage3 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR7131123 | Other | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4815572 | Other | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4829208 | Other | lineage4.8 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR29096150 | Other | lineage4.9 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR10796560 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4816692 | Other | lineage4.1.2.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4818126 | Other | lineage1 | None | ERR4819007 | Other | lineage2.2.1 | None | ERR4821310 | Other | lineage5 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4829333 | Other | lineage4 | None | ERR2513259 | Other | lineage3 | None | ERR4817055 | Other | lineage4.1.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None |
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