Run ID: ERR4821310
Sample name:
Date: 01-04-2023 17:10:55
Number of reads: 1743825
Percentage reads mapped: 77.43
Strain: lineage5
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage5 | West-Africa 1 | AFRI_2;AFRI_3 | RD711 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.38 | streptomycin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.45 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.28 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.22 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9566 | c.2265C>T | synonymous_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.15 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.11 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.13 |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.13 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.11 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.18 |
rpoC | 762902 | c.-468C>T | upstream_gene_variant | 0.28 |
rpoC | 762911 | c.-459C>T | upstream_gene_variant | 0.29 |
rpoC | 762917 | c.-453C>T | upstream_gene_variant | 0.27 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.28 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.28 |
rpoC | 762944 | c.-426C>T | upstream_gene_variant | 0.26 |
rpoC | 762956 | c.-414G>C | upstream_gene_variant | 0.23 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.16 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.16 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.17 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.17 |
rpoC | 763718 | p.Leu117Val | missense_variant | 0.15 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.13 |
rpoC | 763724 | p.Asp119Asn | missense_variant | 0.13 |
rpoC | 763729 | c.360G>C | synonymous_variant | 0.14 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.14 |
rpoC | 763735 | c.366G>C | synonymous_variant | 0.14 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.13 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.14 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.12 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.13 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.21 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 0.29 |
rpoC | 764737 | c.1368G>T | synonymous_variant | 0.29 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.29 |
rpoC | 764755 | p.Asp462Glu | missense_variant | 0.24 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.26 |
rpoC | 764760 | p.Asn464Ser | missense_variant | 0.24 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.24 |
rpoC | 764767 | c.1398G>T | synonymous_variant | 0.23 |
rpoC | 764776 | c.1407C>T | synonymous_variant | 0.24 |
rpoC | 764785 | c.1416C>T | synonymous_variant | 0.18 |
rpoC | 764791 | c.1422C>T | synonymous_variant | 0.16 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.11 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.12 |
rpsL | 781766 | c.207C>T | synonymous_variant | 0.12 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.11 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.12 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.11 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.11 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472068 | n.223T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472282 | n.437T>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472840 | n.995A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.79 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473293 | n.1449delA | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473300 | n.1455C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473305 | n.1460G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1473384 | n.-274A>G | upstream_gene_variant | 0.29 |
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473922 | n.265A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473923 | n.266C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474155 | n.498G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474185 | n.528G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474383 | n.726G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474636 | n.979A>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474637 | n.980C>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474643 | n.986A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474658 | n.1001A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474663 | n.1006C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474672 | n.1015C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474734 | n.1077G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474790 | n.1133C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474932 | n.1275C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475499 | n.1842C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475518 | n.1861A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475521 | n.1864T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475526 | n.1869C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475529 | n.1872A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475532 | n.1875A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475538 | n.1881T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475548 | n.1891C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475549 | n.1892T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475767 | n.2110_2111insT | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476253 | n.2596A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476594 | n.2937C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476603 | n.2946G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 0.43 |
inhA | 1673338 | c.-864G>A | upstream_gene_variant | 1.0 |
rpsA | 1834195 | c.654G>C | synonymous_variant | 0.19 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.11 |
rpsA | 1834228 | c.687C>T | synonymous_variant | 0.14 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.22 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.21 |
rpsA | 1834246 | c.705G>T | synonymous_variant | 0.22 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.31 |
rpsA | 1834258 | c.717G>A | synonymous_variant | 0.13 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.3 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.24 |
rpsA | 1834288 | c.747C>A | synonymous_variant | 0.12 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.21 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.2 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.17 |
rpsA | 1834307 | p.Asp256Gln | missense_variant | 0.17 |
rpsA | 1834312 | c.771G>A | synonymous_variant | 0.17 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.14 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.1 |
rpsA | 1834427 | p.Ile296Val | missense_variant | 0.11 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.1 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.15 |
rpsA | 1834459 | c.918G>C | synonymous_variant | 0.12 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.11 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.12 |
rpsA | 1834474 | c.933C>G | synonymous_variant | 0.12 |
rpsA | 1834486 | p.Glu315Asp | missense_variant | 0.12 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.12 |
rpsA | 1834501 | c.960G>C | synonymous_variant | 0.12 |
rpsA | 1834504 | c.963G>C | synonymous_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101921 | c.1122G>A | synonymous_variant | 1.0 |
ndh | 2103112 | c.-70G>T | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2156570 | c.-459C>A | upstream_gene_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290062 | c.-821G>A | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
ald | 3087184 | c.368_373delCCGACG | disruptive_inframe_deletion | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474026 | p.Ala7Val | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 0.98 |
alr | 3840932 | c.489C>T | synonymous_variant | 1.0 |
ddn | 3986987 | c.144G>T | synonymous_variant | 1.0 |
ddn | 3987180 | p.Asp113Asn | missense_variant | 1.0 |
clpC1 | 4039973 | c.732C>T | synonymous_variant | 0.12 |
clpC1 | 4039981 | p.Leu242Ile | missense_variant | 0.11 |
clpC1 | 4039982 | c.723G>C | synonymous_variant | 0.12 |
clpC1 | 4039994 | p.Glu237Asp | missense_variant | 0.13 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.13 |
clpC1 | 4040015 | c.690G>C | synonymous_variant | 0.13 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.14 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.15 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.15 |
clpC1 | 4040036 | c.669C>G | synonymous_variant | 0.17 |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 0.17 |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 0.12 |
clpC1 | 4040824 | c.-120C>T | upstream_gene_variant | 1.0 |
embC | 4239843 | c.-20A>C | upstream_gene_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embA | 4244635 | p.Val468Ala | missense_variant | 1.0 |
embA | 4245147 | p.Pro639Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4327103 | p.Gly124Asp | missense_variant | 1.0 |
ethA | 4327355 | p.Ser40Phe | missense_variant | 1.0 |
whiB6 | 4338541 | c.-21delA | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4408144 | p.Arg20Pro | missense_variant | 1.0 |