Rv3596c - c.1821C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
37 Sensitive
1 RR-TB
21 HR-TB
6 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
33 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 46 |
| lineage1.1.3.1 | 1 |
| La1.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 5 |
| lineage4.8 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| M.canetti;lineage4.9 | 2 |
| lineage1.2.1.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4.3.4 | 1 |
| lineage4.4.2 | 3 |
| lineage4 | 3 |
| lineage2.2.1 | 7 |
| La3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage1.1.2 | 2 |
| M.canetti;lineage1 | 1 |
| lineage1.1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 98 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819877 | HR-TB | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR473332 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | ERR369158 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR28170694 | Other | lineage4.4.2 | None | ERR4816478 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR18496002 | Sensitive | lineage2.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675265 | Other | lineage4 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | SRR29050770 | Sensitive | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR18496001 | Sensitive | lineage2.2.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR9613554 | MDR-TB | lineage4.3.4.2 | None | ERR4819241 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | ERR736848 | Other | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR29052979 | Other | lineage4.4.2 | None | SRR15014682 | MDR-TB | lineage4.8 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR12142330 | HR-TB | lineage4.4.2 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR349299 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12006550 | Sensitive | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None |
|---|
