Rv0668 - c.246G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
62 Sensitive
25 RR-TB
40 HR-TB
34 MDR-TB
9 Pre-XDR-TB
1 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 5 |
| lineage4.9 | 79 |
| lineage3 | 9 |
| lineage2.2.1 | 28 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.1.1.3.1 | 3 |
| lineage4.3.4.2;lineage4.7 | 1 |
| lineage4.1.1.3 | 5 |
| lineage4.3.3 | 6 |
| lineage4.1.2 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| 4 | |
| lineage4.3.2.1 | 4 |
| lineage4.8.1 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.8 | 6 |
| La1.7;lineage4.9 | 8 |
| lineage4.4.1.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2.1 | 5 |
| lineage4.5 | 1 |
| lineage2.2.2 | 3 |
| lineage4 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.1 | 2 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.4.1.1 | 1 |
| lineage4.9;lineage7 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage3.1.2.1 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.8.2 | 1 |
| La1.7 | 2 |
| lineage4.9.1 | 1 |
| lineage4.6.1.1 | 3 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage4.3.4.1 | 3 |
| lineage4.3.4.2 | 2 |
| lineage4.3.2 | 1 |
| lineage4.1.1.1 | 2 |
| La1.7.1 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.2.1 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage6.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 232 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5311077 | Other | La1.8.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341319 | Other | lineage3 | None | ERR3468488 | Other | La1.8.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR6197021 | MDR-TB | lineage4.3.4.2;lineage4.7 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7240033 | Other | La1.8.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR5341467 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4811529 | Sensitive | lineage2.2.1 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1175474 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR8975044 | Other | lineage4.1.1.2 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR29055611 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR5341373 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR387051 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR1063896 | Sensitive | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046839 | Other | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR22424765 | HR-TB | lineage4.8 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4830353 | Other | La1.7 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR867567 | RR-TB | lineage3 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR11465801 | Other | lineage4.3.4.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR6866241 | Other | lineage4.3.2 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1238559 | Other | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR4798823 | HR-TB | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR6358979 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196545 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR18002941 | RR-TB | lineage2.2.1 | None |
|---|
