EBG00000313339 - n.2650A>T
Drug resistance types
15 Sensitive
28 RR-TB
10 HR-TB
12 MDR-TB
14 Pre-XDR-TB
0 XDR-TB
114 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 25 |
| lineage4.1.1.3 | 4 |
| lineage4.8 | 23 |
| lineage4.1.2.1 | 19 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 2 |
| lineage1.1.2 | 3 |
| lineage4.9 | 17 |
| lineage4 | 6 |
| lineage4.1.3 | 1 |
| lineage4.3.3 | 7 |
| lineage4.1 | 2 |
| lineage3 | 14 |
| lineage3.1.2.1 | 3 |
| lineage5 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage3.1.3 | 2 |
| lineage4.2.2.1 | 1 |
| lineage3.1.1 | 3 |
| lineage4.6.2.2 | 5 |
| lineage4.7 | 9 |
| lineage4.2.1.1 | 2 |
| lineage4.3.2 | 2 |
| lineage4.5 | 2 |
| lineage4.3.4.2 | 6 |
| lineage4.1.1.3.1 | 2 |
| lineage3.1.2 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1 | 2 |
| lineage1.1.3.1 | 2 |
| lineage4.3.4.1 | 1 |
| La3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.4.1.1 | 4 |
| lineage4.3.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.2.1 | 1 |
| La1.8.1 | 3 |
| lineage4.2.2 | 1 |
| La1.2 | 1 |
| lineage4.1.2 | 1 |
| lineage6 | 1 |
| lineage4.7;lineage4.3.4.2 | 2 |
| La1.3 | 1 |
| lineage4.3 | 1 |
| La1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 193 |
Geographic prevalence
Country level data for this variant is available for 33 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR19303985 | Other | lineage4.8 | None | SRR18911555 | Other | lineage4.1.2.1 | None | SRR19303805 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR22424743 | Pre-XDR-TB | lineage1.1.2 | None | SRR21240055 | Other | lineage4.1.2.1 | None | ERR4815104 | Other | lineage4.8 | None | SRR3675475 | Other | lineage4.1.1.3 | None | ERR4815777 | Other | lineage4.9 | None | ERR4814312 | Other | lineage4 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR1665404 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815714 | Sensitive | lineage4.1.2.1 | gb | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR4814952 | Sensitive | lineage3 | None | ERR4814834 | Other | lineage3 | None | ERR4814841 | Other | lineage4.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4814994 | HR-TB | lineage2.2.1 | gb | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4816967 | RR-TB | lineage5 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4815917 | Other | lineage2.2.1 | gb | ERR4817010 | HR-TB | lineage1.2.1.2.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816300 | Other | lineage4.1.2.1 | None | ERR2027291 | Sensitive | lineage3.1.3 | None | ERR4816243 | Sensitive | lineage3 | None | ERR4816147 | RR-TB | lineage2.2.1 | gb | ERR4817047 | Other | lineage4.2.2.1 | gb | ERR4816231 | Other | lineage4 | None | ERR4816462 | Other | lineage4.1.2.1 | None | ERR2229147 | Other | lineage4.8 | None | ERR4816417 | Other | lineage4.9 | None | ERR4816650 | Sensitive | lineage4.1.2.1 | None | ERR2229233 | Sensitive | lineage4 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR4816571 | Other | lineage1.1.2 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4817189 | Other | lineage4.7 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR2228900 | RR-TB | lineage4.8 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR4817730 | Other | lineage4.2.1.1 | gb | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR2513348 | Other | lineage3 | None | ERR4818785 | RR-TB | lineage4.1.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR4818283 | Sensitive | lineage4.5 | gb | ERR2513231 | RR-TB | lineage4.3.4.2 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4818556 | Other | lineage3 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR2512841 | HR-TB | lineage2.2.1 | gb | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR2512443 | Other | lineage4.8 | gb | ERR4818831 | Other | lineage3 | None | ERR4818200 | Other | lineage3.1.2 | gb | ERR2513273 | Other | lineage4.1.2.1 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR2513904 | Other | lineage3.1.2.2 | gb | ERR4819175 | Other | lineage4.1.1.3 | gb | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4820275 | HR-TB | lineage4.4.1.2 | gb | ERR4819528 | RR-TB | lineage3 | None | SRR5153833 | Other | lineage2.2.1 | None | ERR4820729 | Other | lineage2.2.1 | None | ERR4820736 | Other | lineage4.1.2.1 | gb | ERR4819532 | HR-TB | lineage4.6.2.2 | gb | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4819593 | Other | lineage4.5 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR2514533 | Other | lineage4.9 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR5341222 | Sensitive | lineage3.1 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4820891 | Other | lineage4.9 | gb | ERR4821288 | Other | lineage4.7 | None | ERR2514645 | Other | lineage4.3.4.1 | None | ERR2515032 | Other | lineage3 | None | ERR4820846 | RR-TB | lineage4.6.2.2 | gb | ERR4821769 | Other | lineage4.1.2.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4820001 | Other | lineage4.8 | gb | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820083 | Sensitive | lineage3.1 | gb | ERR4820193 | Other | lineage3 | None | ERR4820194 | Other | La3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4821105 | Other | lineage3.1.2 | gb | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4822150 | Other | lineage4.8 | gb | ERR4821371 | Other | lineage4.8 | gb | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4822085 | Other | lineage4.8 | gb | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821519 | Other | lineage3 | gb | ERR4821761 | Other | lineage3 | gb | ERR4821718 | Other | lineage4.2.2.2 | gb | SRR5818388 | Other | lineage4.9 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6046208 | Other | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046646 | Other | lineage4.7 | gb | SRR6046737 | Other | lineage4.9 | None | SRR6152838 | Other | lineage2.2.1.1 | ca | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR6930920 | Sensitive | lineage4.2.1.1 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR8600276 | Other | La1.8.1 | None | SRR8600288 | Other | La1.8.1 | None | ERR10796598 | RR-TB | lineage4.9 | None | DRR188816 | Sensitive | lineage4.2.2 | None | SRR7851312 | Other | La1.2 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796597 | Other | lineage4 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR3806588 | Other | lineage6 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4586795 | Other | La1.8.1 | None | ERR6197023 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR6197021 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR4769479 | Other | La1.3 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR6197027 | Other | lineage4.7 | None | ERR6197025 | Other | lineage4.7 | None | ERR6197028 | Other | lineage4.9 | None | ERR6197033 | Other | lineage4.7 | None | ERR6197031 | Other | lineage4.7 | None | ERR6197032 | Other | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR6197036 | Other | lineage4 | None | ERR6197029 | Other | lineage4.7 | None | ERR6197037 | MDR-TB | lineage4.3.4.2 | None | ERR6197035 | Other | lineage4.7 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR6197042 | RR-TB | lineage4.9 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR6197041 | MDR-TB | lineage4.3.4.2 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR6197039 | MDR-TB | lineage4.3.4.2 | None | ERR6197043 | MDR-TB | lineage4.3.4.2 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR9117826 | Other | lineage3.1.3 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR13180206 | Sensitive | lineage4.8 | None | SRR16278274 | Other | La1.4 | None | SRR11972227 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR15276982 | Pre-XDR-TB | lineage3 | None |
|---|
