Rv3596c - c.1938G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
68 Sensitive
2 RR-TB
39 HR-TB
2 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4 | 1 |
| lineage4.3.3 | 1 |
| 1 | |
| lineage4 | 2 |
| La1.8.1 | 2 |
| lineage2.2.1 | 9 |
| lineage4.9 | 104 |
| lineage3.1.3 | 2 |
| lineage1.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage3 | 3 |
| lineage4.5 | 2 |
| lineage4.3 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.2.1.2 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.4.1 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage1.2.1.2 | 1 |
| La1;lineage4.9 | 1 |
| La1.2.BCG | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.8 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 168 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736817 | HR-TB | lineage4.3.4 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4798823 | HR-TB | None | SRR6045053 | Other | lineage4 | None | SRR1791747 | Other | La1.8.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR1063855 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | ERR926163 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR4812155 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369151 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR28351339 | MDR-TB | lineage4 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR6358979 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR23961529 | Other | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR473332 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR4819357 | Sensitive | lineage4.9 | None |
|---|
