EBG00000313339 - n.2016T>C
Drug resistance types
78 Sensitive
43 RR-TB
8 HR-TB
33 MDR-TB
18 Pre-XDR-TB
0 XDR-TB
85 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 45 |
| lineage4.3.4.2.1 | 5 |
| lineage2.2.1.1 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.8 | 40 |
| lineage4.9 | 63 |
| lineage1.2.2.2 | 1 |
| La1.2.BCG | 1 |
| lineage4.7 | 2 |
| lineage3 | 9 |
| lineage4.1.2.1 | 5 |
| lineage3.1.2.1 | 3 |
| lineage2.2.2 | 9 |
| lineage2.2.2;lineage4.9 | 1 |
| lineage4.9.1 | 2 |
| lineage1.1.2;lineage4.3.4.1 | 1 |
| lineage4.1.1.3 | 5 |
| lineage3.1.2.2 | 1 |
| La1.4 | 1 |
| lineage4.3.2.1;lineage4.9 | 1 |
| lineage4.1.1 | 1 |
| lineage4.1.2 | 6 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.8.1 | 3 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.3.3 | 7 |
| lineage4.3.4.2 | 3 |
| lineage4.2.1 | 6 |
| lineage4.1.1.1 | 4 |
| lineage4.6.2.2 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage3.1.1 | 2 |
| lineage4.3.4.1 | 1 |
| La1.8.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage3.1.1;lineage4.3.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.4.2 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.1.3 | 1 |
| lineage4.2.2 | 1 |
| lineage4.4 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| lineage1.2.1.2 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1.2.2.1 | 1 |
| 1 | |
| lineage1.2.1.1 | 1 |
| lineage5.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 265 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR6981941 | Sensitive | lineage4.3.4.2.1 | None | SRR2101312 | MDR-TB | lineage2.2.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR6397161 | Other | lineage4.2.2.2 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR7443723 | Sensitive | lineage4.9 | None | SRR3105736 | Sensitive | lineage1.2.2.2 | None | ERR10796559 | Other | lineage4.9 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR7086711 | Other | La1.2.BCG | None | SRR7645928 | Other | lineage4.7 | None | SRR3675582 | Other | lineage4.9 | None | ERR867572 | Other | lineage4.9 | None | SRR7070329 | Other | lineage3 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | ERR037501 | Sensitive | lineage4.3.4.2.1 | None | ERR9117788 | Other | lineage3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR124452 | Sensitive | lineage2.2.2;lineage4.9 | None | ERR926173 | Sensitive | lineage4.9 | None | ERR10796577 | Other | lineage4.9 | None | ERR245810 | Sensitive | lineage4.9.1 | None | ERR036233 | Sensitive | lineage1.1.2;lineage4.3.4.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR867567 | RR-TB | lineage3 | None | ERR2228900 | Other | lineage4.8 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR072033 | Sensitive | lineage3.1.2.2 | None | ERR978752 | Other | lineage4.8 | None | SAMN02350446 | Sensitive | lineage2.2.1 | None | ERR6052110 | Pre-XDR-TB | lineage2.2.2 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR502485 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR6982035 | Sensitive | lineage4.3.2.1;lineage4.9 | None | SRR7504779 | Sensitive | lineage4.9 | None | SRR7443730 | Sensitive | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR3725597 | Sensitive | lineage4.9 | None | SRR6982014 | Sensitive | lineage4.1.1 | None | SRR124451 | Sensitive | lineage2.2.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SAMN02585942 | Sensitive | lineage4.1.2 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | SRR7443732 | Sensitive | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | ERR017781 | Other | lineage3 | None | SRR7444071 | Sensitive | lineage4.9 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | SRR7755657 | Other | lineage4.8 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR7444072 | Sensitive | lineage4.9 | None | SRR18002933 | Other | lineage2.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR978747 | Other | lineage4.8 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR7443767 | Sensitive | lineage4.9 | None | SRR5341430 | Other | lineage3 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR1002691 | HR-TB | lineage4.2.1 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR502472 | Sensitive | lineage4.6.2.2 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR245764 | HR-TB | lineage3.1.1 | None | SRR6045909 | Other | lineage4.8.1 | None | ERR978735 | Other | lineage4.8 | None | ERR978762 | Other | lineage4.8 | None | SRR18002976 | Other | lineage2.2.1 | None | ERR10796571 | Other | lineage4.9 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR036191 | Sensitive | lineage4.9.1 | None | SRR5341460 | Other | lineage3 | None | ERR978727 | Other | lineage4.8 | None | SRR3725595 | Sensitive | lineage4.9 | None | ERR1815548 | Other | La1.8.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR323068 | Sensitive | lineage4.9 | None | SRR7443722 | Sensitive | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6257067 | HR-TB | lineage4.2.1 | None | ERR10796594 | Other | lineage4.9 | None | ERR133816 | MDR-TB | lineage2.2.1 | None | ERR245795 | Sensitive | lineage3.1.1;lineage4.3.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR7443726 | Sensitive | lineage4.9 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR6982037 | Sensitive | lineage4.1.1.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR19303815 | Other | lineage4.8 | None | ERR036242 | Sensitive | lineage4.3.4.2.1 | None | ERR108476 | Sensitive | lineage4.1.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR987695 | HR-TB | lineage4.3.4.2 | None | ERR10796589 | Other | lineage4.9 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR6981962 | Sensitive | lineage4.3.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR867571 | Other | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | ERR323048 | Sensitive | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR7443769 | Sensitive | lineage4 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR7443731 | Sensitive | lineage4.9 | None | ERR978761 | Other | lineage4.8 | None | SRR7444084 | Sensitive | lineage4.9 | None | SRR7443768 | Sensitive | lineage4.9 | None | ERR978760 | RR-TB | lineage4.8 | None | SRR7504776 | Sensitive | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | SRR7504782 | Sensitive | lineage4.9 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR1181136 | Sensitive | lineage2.2.1 | None | ERR978694 | Other | lineage4.8 | None | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR978756 | Other | lineage4.8 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR6982078 | Sensitive | lineage4.9 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR2660499 | Sensitive | lineage4.1.1.3 | None | SRR7443725 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR7443733 | Sensitive | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR6982398 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR7443734 | Sensitive | lineage4.9 | None | SRR9971195 | MDR-TB | lineage4.3.3 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR3725590 | Sensitive | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR867573 | Other | lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | DRR188816 | Other | lineage4.2.2 | None | SRR1062859 | Sensitive | lineage2.2.1 | None | SRR7443724 | Sensitive | lineage4.9 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR1873549 | Pre-XDR-TB | lineage2.2.2 | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7444103 | Sensitive | lineage4.9 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR10796591 | Other | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR245846 | Sensitive | lineage2.2.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR1181085 | Sensitive | lineage4.1.2 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | ERR978751 | Other | lineage4.8 | None | SRR6982414 | Sensitive | lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR736816 | Other | lineage4.9 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR6982328 | Other | lineage3.1.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR502484 | Sensitive | lineage4.9 | None | SRR124453 | HR-TB | lineage2.2.2 | None | ERR037234 | Sensitive | lineage4.9 | None | SRR3675509 | Other | lineage4.9 | None | ERR245662 | Sensitive | lineage1.2.2.1 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR7444102 | Sensitive | lineage4.9 | None | SRR6982138 | Sensitive | lineage4.1.1.3 | None | ERR10796598 | Other | lineage4.9 | None | SRR3725589 | Sensitive | lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR7504773 | Sensitive | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR7444098 | Sensitive | lineage4.9 | None | ERR245740 | Sensitive | lineage4.1.2 | None | ERR867569 | Other | lineage4.9 | None | SRR18002987 | Other | lineage2.2.1 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR144568 | Sensitive | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR502483 | Sensitive | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR6052085 | Pre-XDR-TB | lineage2.2.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR7444074 | Sensitive | lineage4.9 | None | SRR7443757 | Sensitive | lineage4.9 | None | SRR3725588 | Sensitive | lineage4.9 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR3725596 | Sensitive | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | ERR019855 | Other | lineage3 | None | SRR11342669 | Other | lineage4.8 | None | SRR7504786 | Sensitive | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR6982558 | Sensitive | lineage4.3.4.2.1 | None | SRR3725591 | Sensitive | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR1140774 | Sensitive | lineage5.1.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR10796634 | Other | lineage4.7 | None |
|---|
