EBG00000313339 - n.2016T>C


Drug resistance types
91 Sensitive 52 RR-TB 21 HR-TB 39 MDR-TB 21 Pre-XDR-TB 0 XDR-TB 188 Other
lineage Counts
lineage Count
lineage4.9 64
lineage4.3.2 2
lineage4.3.4.2.1 8
lineage2.2.1 71
lineage4 15
lineage4.1.2.1 14
lineage4.4.1.1 7
lineage2.2 3
lineage4.1.1.2 1
lineage4.4 2
19
lineage4.3.3 12
lineage4.1.1 9
lineage3.1.1 9
lineage4.7 3
lineage4.3.2.1 4
lineage4.1.2 10
lineage3 24
lineage4;lineage2 1
lineage4.3.4.2 3
lineage4.8 28
lineage4.6.2.2 4
La1.8.1 4
lineage4.8;lineage4.2.1 1
lineage4.2.1 6
lineage4.2.2 2
lineage4.3.4.1;lineage1.1.2 1
lineage4.9;lineage1.1 1
lineage3.1.2.2 2
lineage4.9;lineage4.1 1
lineage4.9;lineage4.3.4 1
lineage4.3.4.1 3
lineage4.6 2
lineage4.3 1
lineage4.3.4 2
lineage4.1.1.3 6
La1.3 2
lineage2.2.2 6
lineage1.1.3.2 1
lineage1.2.2.1 1
lineage4.2.2.2 4
lineage4.4.1.2 2
lineage4.9.1 2
lineage2.2.1.1 3
lineage4.4.1.1.1 2
lineage1.2.2.2 4
lineage4.3.1.1 3
lineage4.8.2 2
lineage4.8.1 1
lineage4.9;lineage4.4.2 1
lineage2 1
La1.4 1
lineage2.2.2;lineage2.2.1 1
lineage4.5 2
lineage4.4.2 1
lineage6 1
lineage1.2.1.2 1
lineage1.1.1 1
lineage4.9;lineage3.1.1 1
lineage1.2.1.1 2
lineage3.1.2.1 2
lineage4.8;lineage4.2.1.1 1
lineage3.1 2
lineage1.1.2 5
lineage4.1.1.3.1 4
lineage4.3.2.1;lineage3.1.1 1
lineage4;lineage3 1
lineage4.1.1.3.1;lineage3.1.2 1
lineage6.1.3 1
lineage4.9;lineage3 1
lineage4.6.5 1
spoligotype Counts
spoligotype Count
None 412
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR502483 Sensitive lineage4.9 None
ERR4972567 MDR-TB lineage4.3.2 None
ERR502484 Sensitive lineage4.9 None
ERR502489 Sensitive lineage4.9 None
ERR502485 Sensitive lineage4.9 None
ERR502486 Sensitive lineage4.9 None
ERR502492 Sensitive lineage4.9 None
ERR502490 Sensitive lineage4.9 None
ERR502497 Sensitive lineage4.9 None
ERR502493 Sensitive lineage4.9 None
ERR502498 Sensitive lineage4.9 None
SRR6982099 Sensitive lineage4.3.4.2.1 None
SRR6982508 Sensitive lineage4.9 None
SRR6856119 Sensitive lineage2.2.1 None
SRR6982104 Sensitive lineage2.2.1 None
SRR6982414 Sensitive lineage4.9 None
SRR6982138 Sensitive lineage4 None
SRR6896348 Sensitive lineage4.1.2.1 None
SRR6896340 HR-TB lineage4.4.1.1 None
SRR6896339 MDR-TB lineage2.2.1 None
SRR6982178 Sensitive lineage2.2 None
SRR6982430 Other lineage4.3.4.2.1 None
SRR6982180 Sensitive lineage4.1.1.2 None
SRR6981977 Sensitive lineage2.2.1 None
SRR6982195 RR-TB lineage4.4 None
SRR6982196 Sensitive None
SRR6832644 Other lineage4.3.3 None
SRR6982297 Sensitive lineage4.1.1 None
SRR6982328 HR-TB lineage3.1.1 None
SRR6982337 Sensitive lineage4.7 None
SRR6981962 Sensitive None
SRR6981981 Other lineage4.3.3 None
SRR6982272 Sensitive lineage4.9 None
SRR6982472 Sensitive lineage4.4.1.1 None
SRR6981912 Sensitive None
SRR6981922 Sensitive lineage4.3.2.1 None
SRR6981941 Sensitive lineage4.3.4.2.1 None
SRR6982011 Other lineage4.1.1 None
SRR6982385 Sensitive lineage4.1.2 None
SRR6981993 Other lineage4.3.2.1 None
SRR6982014 Other lineage4.1.1 None
SRR6982405 Sensitive None
SRR6982035 Sensitive lineage4.9 None
SRR6982037 Sensitive lineage4.1.1 None
SRR6982075 Sensitive lineage3 None
SRR6982026 Sensitive lineage4.3.3 None
SRR6982398 MDR-TB lineage2.2 None
SRR6856032 Sensitive lineage2.2.1 None
SRR6982076 Sensitive lineage4.9 None
ERR323036 HR-TB None
SRR6982077 MDR-TB lineage4.3.2.1 None
SRR6982514 Sensitive lineage4.3.3 None
SRR6982510 Sensitive lineage4;lineage2 None
SRR6982558 Other lineage4.3.4.2 None
SRR7131121 Other lineage4.3.3 None
SRR7131097 Sensitive lineage2.2.1 None
SRR7131123 Other lineage4.8 None
SRR7131161 Other lineage4.8 None
SRR7131149 Pre-XDR-TB lineage4.8 None
SRR7131147 Other lineage4.1.2.1 None
SRR7131145 Other lineage4.1.2.1 None
SRR7131216 Other lineage4.1.2.1 None
SRR7131195 Other lineage2.2.1 None
SRR7645899 RR-TB lineage2.2.1 None
SRR7131221 Other lineage4.6.2.2 None
SRR8600069 Other La1.8.1 None
SRR7645808 HR-TB lineage4.8;lineage4.2.1 None
SRR7645906 Other lineage2.2.1 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR7645927 Other lineage4.8 None
SRR7645928 RR-TB lineage4.7 None
SRR8600288 Other La1.8.1 None
SRR7645971 Other lineage2.2.1 None
ERR019855 Other lineage3 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
ERR323048 Pre-XDR-TB lineage4.9 None
ERR017781 Other lineage3 None
SRR7755655 Other lineage4.1.2.1 None
SRR7755657 Other lineage4.8 None
SRR9971195 MDR-TB lineage4.3.3 None
ERR323061 Sensitive lineage4.9 None
ERR323068 Sensitive lineage4.9 None
DRR188816 Sensitive lineage4.2.2 None
ERR036233 Sensitive lineage4.3.4.1;lineage1.1.2 None
ERR037234 Sensitive lineage4.9 None
ERR10796553 Other lineage4.9;lineage1.1 None
ERR037501 Sensitive lineage4.3.4.2.1 None
ERR072033 Sensitive lineage3.1.2.2 None
ERR10796558 Sensitive lineage4 None
ERR10796555 Other lineage4.1.2.1 None
ERR10796559 Other lineage4.9 None
ERR10796560 MDR-TB lineage4.9;lineage4.1 None
ERR10796566 Other lineage4.9;lineage4.3.4 None
ERR10796562 Other lineage4.3.4.1 None
ERR10796563 Other lineage4.3.3 None
ERR10796564 Other lineage4.3.3 None
ERR10796561 Other lineage4.3.2 None
ERR10796572 Other lineage4.3.4.1 None
ERR10796573 Other lineage4.8 None
ERR10796571 Other lineage4.9 None
ERR10796578 Other lineage2.2.1 None
ERR10796574 Other lineage4.9 None
ERR10796577 RR-TB lineage4.9 None
ERR10796580 RR-TB lineage4.6 None
ERR10796589 Other lineage4.9 None
ERR10796582 HR-TB lineage4.3 None
ERR10796581 HR-TB lineage4.1.2 None
ERR10796593 RR-TB lineage4 None
ERR10796591 MDR-TB lineage4.9 None
ERR10796592 Other lineage4 None
ERR10796598 RR-TB lineage4.9 None
ERR10796595 Other lineage4.9 None
ERR10796596 Other lineage4.9 None
ERR10796594 Other lineage4.9 None
ERR10796597 Other lineage4 None
ERR10796599 Other lineage4 None
ERR10796633 RR-TB lineage4.3.4 None
ERR10796620 Other lineage4.1.1 None
ERR10796626 Other lineage4.1.2 None
ERR10796628 Other lineage4.3.3 None
ERR10796630 HR-TB None
ERR10796618 Other lineage4.3.4.1 None
ERR10796629 Other lineage4 None
ERR10796636 Other lineage4.1.2.1 None
ERR10796634 Other lineage4 None
ERR144568 Pre-XDR-TB None
ERR10796635 Other lineage4 None
ERR108476 Sensitive lineage4.1.2.1 None
ERR133816 MDR-TB lineage2.2.1 None
ERR3283006 RR-TB lineage4.9 None
ERR3283043 Other lineage4.9 None
ERR3283008 Other lineage4.9 None
ERR3283051 Other lineage4.9 None
ERR3797062 RR-TB lineage4.9 None
ERR3324325 MDR-TB lineage4.6.2.2 None
ERR473278 Sensitive lineage4.9 None
ERR4627369 Other La1.8.1 None
ERR473279 Other lineage4.9 None
ERR473367 Sensitive lineage4.9 None
ERR473303 Sensitive lineage4.9 None
ERR473341 Sensitive lineage4.1.1.3 None
ERR4769554 RR-TB lineage4.9 None
ERR4769470 Sensitive lineage4.9 None
ERR4769505 Other lineage4.9 None
ERR4769428 Other La1.3 None
ERR4769471 Other La1.3 None
ERR4769527 Sensitive lineage4.9 None
ERR6052110 Pre-XDR-TB lineage2.2.2 None
ERR5979454 Pre-XDR-TB lineage3 None
ERR2514801 Other lineage1.1.3.2 gb
ERR6052085 Pre-XDR-TB lineage2.2.2 None
ERR6197022 Other lineage4.9 None
ERR6197032 Other lineage4.9 None
ERR6197024 RR-TB lineage4.9 None
ERR6197040 Other lineage4.9 None
ERR245662 Sensitive lineage1.2.2.1 None
ERR6397161 Other lineage4.2.2.2 None
ERR245846 Sensitive lineage2.2.1 None
ERR736805 Sensitive lineage2.2.1 None
ERR736822 Sensitive lineage4.4.1.2 None
ERR736816 Other lineage4.9 None
SRR023450 RR-TB lineage2.2.1 None
ERR779662 Sensitive lineage3.1.1 None
ERR036242 Sensitive lineage4.3.4.2.1 None
ERR036191 Sensitive lineage4.9.1 None
ERR245764 HR-TB lineage3.1.1 None
ERR9117740 Other lineage3.1.1 None
ERR983238 MDR-TB lineage2.2.1.1 None
ERR987695 HR-TB lineage4.3.4.2 None
ERR7821131 MDR-TB lineage4.4.1.1.1 None
ERR9117732 Other lineage1.2.2.2 None
ERR9117788 Other lineage3 None
ERR9117812 Other lineage4.3.1.1 None
ERR9117827 Other lineage1.2.2.2 None
ERR9117841 Other lineage4.8.2 None
SRR023487 RR-TB lineage2.2.1 None
SRR1011488 Other lineage2.2.1 None
SRR1002691 HR-TB lineage4.2.1 None
SRR10315464 MDR-TB lineage4.4.1.1 None
SRR10315556 Sensitive lineage2.2.1 None
SRR10315465 MDR-TB lineage4.4.1.1 None
SRR10315579 Other lineage2.2.1.1 None
SRR10315707 MDR-TB lineage4.4.1.1.1 None
SRR1181085 Sensitive lineage4.1.2 None
SRR1062859 Sensitive lineage2.2.1 None
SRR11342688 Other lineage4.2.2.2 None
SRR11349172 RR-TB lineage4.3.2.1 None
SRR11349187 Pre-XDR-TB lineage4.8.1 None
SRR1173310 MDR-TB None
SRR1180237 Sensitive lineage4.1.2 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR1173719 HR-TB lineage3 None
SRR1181319 Other lineage2.2.1 None
SRR1181136 Sensitive lineage2.2 None
SRR1181242 Sensitive lineage4.1.2 None
SRR1182994 Sensitive lineage4.1.2 None
SRR12199468 Sensitive lineage4.9;lineage4.4.2 None
SRR1183080 RR-TB lineage4.9 None
SRR11871419 Pre-XDR-TB lineage2.2.1 None
SRR14801652 MDR-TB lineage4.3.3 None
SRR124451 HR-TB None
SRR124453 HR-TB None
SRR124452 HR-TB lineage2 None
SRR14334194 Pre-XDR-TB lineage2.2.1 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR16156832 RR-TB None
SRR1735596 RR-TB lineage4.9 None
SRR16278274 Other La1.4 None
SRR16627752 RR-TB lineage4.4 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR1735591 Other lineage4.1.2.1 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR18002876 MDR-TB lineage2.2.2;lineage2.2.1 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002908 Other lineage2.2.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18002930 MDR-TB lineage2.2.1 None
SRR18002933 Other lineage2.2.1 None
SRR18002937 Other lineage2.2.1 None
SRR18002945 RR-TB lineage2.2.1 None
SRR18002956 HR-TB lineage2.2.1 None
SRR18002954 Other lineage2.2.1 None
SRR18002974 Pre-XDR-TB lineage2.2.1 None
SRR18002963 Other lineage2.2.1 None
SRR18002967 Pre-XDR-TB lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
SRR18002976 Other lineage2.2.1 None
SRR18002980 Other lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18003007 MDR-TB lineage4.5 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR18002987 Other lineage2.2.1 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR18003009 MDR-TB lineage2.2.1 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18003023 Other lineage2.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003027 Other lineage2.2.1 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR18003031 HR-TB lineage2.2.1 None
SRR18003049 Other lineage2.2.1 None
SRR18003032 Other lineage2.2.1 None
SRR18003038 Other lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR19304115 Other lineage4.1.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR18213726 Other lineage3 None
SRR18213736 MDR-TB lineage3 None
SRR18911231 Sensitive lineage4.1.1.3 None
SRR19303815 Other lineage4.8 None
SRR19303817 Other lineage2.2.1 None
SRR19303899 Other lineage3 None
SRR19303907 Other lineage4.8 None
SRR19304094 Other lineage6 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR19303818 Other lineage4.3.4.2 None
SRR19303820 RR-TB lineage4.8 None
SRR19303917 Other lineage2.2.1 None
SRR19304104 Other lineage4.8 None
SRR21675637 Sensitive lineage4.3.3 None
SRR20969475 Other lineage1.2.1.2 None
SRR2101617 Other lineage4.1.1 None
SRR2101774 Sensitive lineage2.2.1 None
SRR19576436 Sensitive None
SRR2101312 MDR-TB lineage2.2.1 None
SRR2101803 Sensitive lineage4.3.3 None
SRR21658550 Other lineage1.1.1 None
ERR171142 Other lineage4.9;lineage3.1.1 None
SRR21727760 Other lineage2.2.1 None
ERR176771 Sensitive None
ERR161014 Sensitive lineage4.3.4.2.1 None
ERR1815548 Other La1.8.1 None
SRR22424778 RR-TB lineage2.2.1.1 None
SAMEA3501065 RR-TB lineage4.8 None
SRR3105736 Other lineage1.2.2.2 None
ERR161125 Sensitive lineage4.3.4 None
ERR161173 Sensitive lineage4.3.4.2.1 None
SRR3675227 Other lineage4.9 None
SRR3675265 Other lineage4 None
SRR3675261 Other lineage1.2.1.1 None
SRR3675230 RR-TB lineage3 None
ERR176450 Sensitive lineage4.1.1 None
ERR2229540 Other lineage4.8 None
ERR4815045 Other lineage2.2.1 None
ERR192070 Other None
ERR4815556 RR-TB lineage3 None
ERR4815022 Other lineage3.1.2.1 None
SAMEA3501015 Other lineage4.8 None
SRR3675509 Other lineage4.9 None
SRR3675565 Other lineage3 None
ERR2027252 Other lineage4.8;lineage4.2.1.1 None
ERR2027257 Other lineage4.1.2.1 None
SRR3675513 Other lineage4.8 None
ERR2229557 HR-TB lineage4.8 None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR2027255 HR-TB lineage4.4.1.1 None
ERR2027290 RR-TB lineage3.1 None
SRR3675552 RR-TB lineage4.9 None
ERR4816717 RR-TB lineage3.1.2.1 None
ERR4817069 RR-TB None
ERR4816397 Other lineage1.1.2 None
ERR4816702 RR-TB lineage4.6.2.2 None
SRR4033203 Sensitive lineage4.9 None
ERR2229147 Other lineage4.8 None
ERR2229436 Other lineage4.8 None
ERR2228838 RR-TB lineage4.8 None
ERR2228815 RR-TB lineage4.8 None
ERR2228899 RR-TB lineage4.8 None
ERR2228890 Other lineage4 None
ERR2228900 RR-TB lineage4.8 None
ERR2228910 Other lineage4.8 None
ERR4818797 Other lineage4.5 None
ERR2513382 RR-TB lineage4.1.1.3 None
SRR4034769 Other lineage4.1.1 None
SRR5007186 Other lineage4.6 None
ERR4818831 Other lineage3 None
SAMEA3501063 RR-TB lineage4.8 None
SRR5007161 RR-TB lineage4.1.1.3.1 None
ERR2512423 Other lineage4.1.1.3 None
ERR245740 Sensitive lineage4.1.2 None
ERR245795 Sensitive lineage4.3.2.1;lineage3.1.1 None
ERR245810 Sensitive lineage4.9.1 None
SRR5007163 MDR-TB lineage4;lineage3 None
SRR5007167 RR-TB lineage4.1.1.3.1 None
SRR5007204 Other lineage4.1.2.1 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
SAMEA3501067 RR-TB lineage4.8 None
ERR4819096 Other lineage4.4.1.1 None
SRR5341460 Other lineage3 None
ERR4819533 Other lineage1.1.2 None
SAMN02350446 Sensitive lineage2.2.1 None
SAMEA3501070 RR-TB lineage4.8 None
ERR2514430 Other lineage4.1.1.3.1;lineage3.1.2 None
SRR5341430 Other lineage3 None
SAMN02585942 Sensitive lineage4.1.2 None
SAMEA3501052 RR-TB lineage4.8 None
SRR6045424 Other lineage1.1.2 None
SRR6045422 Other lineage4.3.1.1 None
SRR6045464 Other lineage4.1.1.3 None
SAMEA3501046 RR-TB lineage4.8 None
ERR4821054 Other lineage3 None
SRR6045485 Other lineage4.9 None
SRR6045496 Other lineage6.1.3 None
SRR6045516 Other lineage3.1.1 None
SRR6045664 Other lineage4.2.1 None
SRR6045553 RR-TB lineage4.9 None
ERR2660499 Sensitive lineage4.1.1.3 None
SRR6046117 RR-TB lineage4.9 None
SRR6045705 Other lineage4.9 None
SRR6045743 Other lineage3 None
SRR6046210 Other lineage4 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR6044769 Other lineage1.1.2 None
SRR6045778 Other lineage3.1 None
SRR6045843 Other lineage4.2.2.2 None
SRR5818647 RR-TB lineage4.3.4.2.1 None
SRR6044873 Other lineage4.1.1.3.1 None
SRR6045909 Other lineage4.8 None
SRR6044841 Other lineage4.9 None
SRR6046159 Other lineage4.8.2 None
SRR6044904 Other lineage3 None
SRR6045944 Other lineage4.1.2.1 None
SRR6044936 Other lineage4 None
SRR6044952 RR-TB lineage4.9 None
SRR6044983 Other lineage3.1.1 None
SRR6045928 Other lineage4.9 None
SRR6044916 Other lineage4.1.1 None
SRR6045022 Other lineage3.1.1 None
SRR6045267 RR-TB lineage4 None
SRR6046020 Other lineage3 None
SRR6045178 Other lineage3 None
SRR6045125 Other lineage1.1.2 None
SRR6045335 Other lineage4.1.2.1 None
SRR6045289 Other None
SRR6046239 Other lineage4.9;lineage3 None
SRR6045384 Other lineage4.1.2 None
SRR6046250 Other lineage4.9 None
SRR6046275 Other lineage3.1.1 None
SRR6046343 Other lineage2.2.1 None
SRR6046291 Other lineage3 None
SRR6046359 Other lineage4.7 None
SRR6046484 Other lineage1.2.2.2 None
ERR2843536 Other lineage2.2.1 None
SRR6046376 Other lineage3 None
ERR4828879 MDR-TB lineage3 None
SRR6046440 Other lineage3.1.2.2 None
SRR6046482 HR-TB None
SRR6046729 Other None
SRR6046497 Other lineage4.9 None
SRR6046616 Other lineage4.3.1.1 None
SRR6046848 Other lineage4.6.5 None
SRR6046766 Other lineage3.1.1 None
SRR6046815 Other lineage3 None
SRR6046802 Other lineage4 None
SRR6484909 Sensitive lineage2.2.1 None
SRR6153231 Sensitive lineage4.4.1.2 None
SRR6982078 Sensitive None
SRR6257067 HR-TB lineage4.2.1 None
ERR502470 RR-TB lineage4.9 None
ERR502472 Other lineage4.6.2.2 None
ERR502482 Sensitive lineage4.9 None