EBG00000313339 - n.1079C>T
Drug resistance types
26 Sensitive
38 RR-TB
13 HR-TB
40 MDR-TB
24 Pre-XDR-TB
1 XDR-TB
113 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 51 |
| lineage4 | 2 |
| lineage4.1.2.1 | 13 |
| lineage4.9 | 38 |
| lineage3.1.2.1 | 1 |
| lineage4.4.2 | 5 |
| lineage4.1.1.3 | 7 |
| lineage4.3.4.2 | 2 |
| lineage2.2.1.1 | 3 |
| lineage2.2;lineage4 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.8 | 17 |
| lineage3 | 10 |
| lineage4.2.1 | 7 |
| lineage2.2.2 | 4 |
| La1.7.1 | 3 |
| lineage4.4 | 1 |
| La1.8.1 | 7 |
| lineage4.2.2 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage4.3.3 | 7 |
| lineage4.3.3;lineage4.8 | 1 |
| lineage4.7 | 2 |
| lineage1.1.3.1 | 2 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 3 |
| lineage4.5 | 1 |
| lineage3;lineage4 | 2 |
| lineage6.1.1 | 8 |
| lineage4.8.1 | 2 |
| lineage4.4.1.1 | 2 |
| lineage3.1.1 | 4 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.3.4.1 | 4 |
| La1.2 | 2 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| La1.4 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| La1.6 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.2.1.1 | 2 |
| lineage4.1.3 | 1 |
| La2 | 1 |
| lineage4.3.1.1 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage5.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.1.2 | 1 |
| 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 255 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18002974 | Other | lineage2.2.1 | None | SRR3675565 | Other | lineage4 | None | ERR4822138 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR11465777 | Sensitive | lineage4.1.1.3 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR6046117 | Other | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR867575 | Other | lineage4.9 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR11342680 | Other | lineage4.8 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR1815538 | Other | La1.7.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR5087596 | Other | La1.8.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR7069835 | Other | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR4817874 | Other | lineage3 | None | SRR7070515 | Other | lineage1.1.3.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR11465830 | Sensitive | lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR1175474 | Other | lineage4.9 | None | SRR1792025 | Other | La1.8.1 | None | ERR4820030 | Other | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR24827300 | Sensitive | lineage6.1.1 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7070087 | Other | lineage4.8.1 | None | DRR184982 | Other | lineage2.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR19303907 | Other | lineage4.8 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR19303815 | Other | lineage4.8 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR7069946 | Other | lineage4.8 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR15508556 | Other | lineage4.3.4.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR3468488 | Other | La1.8.1 | None | ERR11465829 | Sensitive | lineage4.9 | None | SRR1173719 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4818831 | Other | lineage3 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR4820075 | Other | lineage4.1.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR3675389 | Other | lineage4.9 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR4818691 | Other | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | ERR2514351 | Sensitive | lineage3 | gb | SRR7851312 | Other | La1.2 | None | SRR1173185 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | ERR4797718 | Sensitive | lineage1.1.2 | in | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | ERR9787106 | Sensitive | lineage6.1.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1792011 | Other | La1.8.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR19303805 | Sensitive | lineage4.8 | None | ERR867569 | Other | lineage4.9 | None | ERR553341 | Sensitive | lineage6.1.1 | de | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR21676327 | Sensitive | lineage6.1.1 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | ERR1023259 | Sensitive | lineage6.1.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR6982246 | RR-TB | lineage4.1.2;lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR6045464 | Other | lineage4.1.1.3 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR4818050 | Sensitive | lineage4.6.2.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR3439489 | RR-TB | La1.8.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR7070521 | Other | lineage4.2.1.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR4819002 | HR-TB | lineage4.8 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR7070293 | Other | lineage4.8 | None | ERR1023265 | Sensitive | lineage6.1.1 | None | SRR19304104 | Other | lineage4.8 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR21469200 | Other | La1.7.1 | None | SRR7069193 | Other | lineage4.3.1.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4821286 | Other | lineage4.8 | None | ERR867572 | Other | lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR867555 | Other | lineage3 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR3800996 | Sensitive | lineage6.1.1 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR502517 | Other | lineage5.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR5311077 | Other | La1.8.1 | None | ERR5979407 | Other | lineage3 | None | SRR7069074 | Other | lineage3 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1184308 | RR-TB | lineage4.9 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | ERR11067902 | Sensitive | lineage4.8 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR2513819 | Pre-XDR-TB | lineage4.3.3 | gb | SRR6785281 | Other | lineage4.2.1.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR19303899 | Other | lineage3 | None | ERR4817069 | RR-TB | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR11465776 | Sensitive | lineage4.1.1.3 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | SRR7070320 | Other | lineage4.8 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR9787244 | Sensitive | lineage6.1.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR21240055 | Other | lineage4.1.2.1 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None |
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