EBG00000313339 - n.1887A>T
Drug resistance types
93 Sensitive
6 RR-TB
67 HR-TB
23 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
104 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 157 |
| lineage2.2.2 | 1 |
| lineage4.3.4.2.1 | 5 |
| lineage2.2 | 3 |
| lineage2.2.1.1 | 2 |
| 3 | |
| lineage3 | 4 |
| lineage5.2 | 2 |
| lineage4.9;lineage7 | 4 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.2.1 | 16 |
| lineage4.1.2.1 | 8 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.5 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.3.3 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.2.1 | 2 |
| La1.7;lineage4.9 | 7 |
| lineage4.3.4.2 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.3.4.1 | 5 |
| lineage4.1.1.1 | 1 |
| lineage4.8 | 5 |
| La2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.8.1 | 5 |
| lineage4.1.1.3 | 2 |
| lineage4 | 1 |
| lineage4.4.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.3;lineage4.9 | 1 |
| La1.7.X-unk4 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1.1.2 | 3 |
| lineage3;lineage4 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage3.1.2.1 | 2 |
| lineage1.2.1.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.3.4 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La1.2;La1.8.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage1.1.3.1 | 2 |
| La1;lineage4.9 | 3 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage6.1.3 | 2 |
| La1.2 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.4.1.1 | 1 |
| La3;lineage4.3.4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3;lineage4.9 | 1 |
| La1.2.BCG | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 302 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797081 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR8692905 | Sensitive | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR752229 | Other | lineage4.5 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | SRR6044875 | Sensitive | lineage4.9 | None | ERR4814994 | HR-TB | lineage2.2.1 | gb | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR6358979 | Other | lineage4.9 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1183531 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR736848 | Other | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4817434 | Other | lineage3 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR1182900 | Sensitive | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR3273109 | HR-TB | lineage4 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR13285191 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR1181569 | Other | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR473332 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1180087 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR1183152 | Other | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR13285192 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | SRR5341373 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | SRR1180687 | Other | lineage4.9 | None | SRR1183684 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1181147 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR1180686 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR3283032 | Other | lineage4.9 | None | SRR1181299 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR3283010 | Sensitive | La1.8.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR1181580 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1181422 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR1180024 | Other | lineage4.9 | None | SRR1183339 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR1180047 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183170 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28351488 | MDR-TB | lineage2.2.1 | None | SRR5341387 | Other | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | ERR9786639 | Sensitive | lineage4.8 | None | SRR1183438 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1181264 | Sensitive | lineage4.9 | None | SRR1183190 | Other | lineage4.9 | None | SRR1183281 | Other | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR9786597 | Other | lineage4.6.2.2 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR137286 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR1063896 | Sensitive | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR1159378 | Other | lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR7851312 | Other | La1.2 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR1182954 | Other | lineage4.9 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR926160 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | SRR8692887 | Other | None | ERR926158 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1182878 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | SRR1196545 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR5341467 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None |
|---|
