EBG00000313339 - n.1887A>T
Drug resistance types
75 Sensitive
22 RR-TB
89 HR-TB
26 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
117 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 73 |
| lineage4.9;La1.3 | 1 |
| La1.2 | 3 |
| lineage4.9 | 47 |
| 64 | |
| lineage1.1.2 | 3 |
| lineage3.1.2.1 | 3 |
| lineage2.2 | 4 |
| lineage2.2.1 | 21 |
| lineage2.2.1.2 | 3 |
| lineage4.4.1.1 | 5 |
| lineage4.3.4 | 3 |
| lineage4.3.4.2 | 2 |
| lineage4.5 | 2 |
| lineage1.1.3.1 | 4 |
| lineage4.3 | 1 |
| lineage5.2 | 2 |
| lineage2.2.1.1 | 3 |
| lineage5.1.1 | 1 |
| lineage3 | 16 |
| lineage1.2.2.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.8 | 8 |
| lineage4.1.2.1 | 18 |
| lineage4.6.2.2 | 2 |
| lineage4.6.1.1 | 2 |
| lineage2.2.2 | 1 |
| lineage4.3.3 | 4 |
| lineage4.2.1 | 3 |
| La1.8.1 | 3 |
| lineage4.2.2.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| La1.7.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4;lineage2.2 | 2 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage2.1 | 3 |
| lineage4.1.1 | 1 |
| lineage4.1 | 3 |
| lineage4.3.4.2.1 | 5 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage3.1.3 | 1 |
| lineage4.1.2 | 3 |
| lineage4.4 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.8;lineage3 | 1 |
| lineage3.1.1 | 1 |
| lineage4.6.5 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.4.2 | 1 |
| lineage4.9;lineage1.1 | 1 |
| La1 | 1 |
| La1.7.X-unk4 | 1 |
| lineage4;lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 344 |
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769474 | HR-TB | lineage4 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4811493 | HR-TB | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR6866410 | Sensitive | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358979 | Other | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR752229 | Other | lineage4.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR751326 | Sensitive | lineage4 | None | ERR751345 | Other | lineage5.1.1 | None | ERR9117788 | Other | lineage3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9119669 | HR-TB | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR10808805 | Sensitive | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173740 | Other | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180252 | Other | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14801749 | Sensitive | None | SRR1791747 | Other | La1.8.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR22048374 | Sensitive | lineage4.8 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR8692897 | Other | lineage4.9 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692855 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692782 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692888 | Other | lineage4.9 | None | SRR8692775 | Other | lineage4.9 | None | SRR8692853 | Sensitive | lineage4.9 | None | SRR8692887 | Other | None | ERR176778 | HR-TB | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR176779 | HR-TB | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4815310 | Other | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR181744 | HR-TB | None | ERR4814709 | Other | lineage4.1.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR4815550 | Other | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675270 | HR-TB | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4814905 | Other | lineage4.8 | gb | ERR4814994 | HR-TB | lineage2.2.1 | gb | ERR176651 | HR-TB | None | ERR4814986 | Other | lineage4.3.4.2 | None | ERR181887 | HR-TB | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR3675456 | HR-TB | None | ERR4816001 | Other | lineage3 | None | ERR4816110 | Sensitive | lineage4.9 | gb | ERR2027257 | Other | lineage4.1.2.1 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816417 | Other | lineage4.9 | None | SRR3675555 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR212123 | Other | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816464 | Other | lineage3 | None | ERR4817109 | Other | lineage3 | None | ERR212138 | HR-TB | lineage4 | None | ERR2229197 | Sensitive | lineage4 | None | ERR2229198 | MDR-TB | lineage4.8 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4817434 | Other | lineage3 | None | ERR4816734 | Sensitive | lineage4.9 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818831 | Other | lineage3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR4819073 | Other | lineage4.1.2.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341453 | Sensitive | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4820230 | Other | lineage4.1.2.1 | gb | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4820484 | Other | lineage4.8 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4820324 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4819555 | Other | lineage4.8 | None | ERR4819622 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR6359082 | Other | lineage4.9 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | SRR5341315 | Sensitive | None | SRR5341310 | Other | lineage1.1.2 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | SRR5341306 | Pre-XDR-TB | lineage4.4 | None | ERR4820817 | Other | lineage4.1.2.1 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | ERR4821791 | HR-TB | lineage4.1.2.1 | None | SRR5341330 | HR-TB | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045485 | Other | lineage4.9 | None | SRR5341469 | Other | lineage4 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | SRR5535933 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821519 | Other | lineage3 | gb | ERR4821360 | Other | lineage4.1.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR4821718 | Other | lineage4.2.2.2 | gb | SRR6046210 | Other | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044817 | Other | lineage3 | None | SRR6044784 | MDR-TB | lineage3 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6045053 | Other | None | SRR6045010 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6045158 | Other | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6046046 | Other | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | SRR6046299 | HR-TB | None | SRR6046492 | Other | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6511621 | HR-TB | None | SRR6046815 | Other | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046878 | HR-TB | lineage4 | None | ERR4831117 | HR-TB | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831792 | MDR-TB | lineage4;lineage2.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR502510 | Sensitive | lineage4 | None | SRR9940972 | Other | lineage4.9 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323107 | Other | lineage4 | None | ERR323045 | HR-TB | None | SRR7851312 | Other | La1.2 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR108471 | HR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283008 | Other | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283025 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188247 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None |
|---|
