TB-Profiler result

Run: SRR5818455
Summary

Run ID: SRR5818455

Sample name:

Date: 04-04-2023 11:31:40

Number of reads: 326802

Percentage reads mapped: 98.16

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.62
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.66
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.64
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.16
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.15
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.23
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.22
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.21
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 0.22
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.23
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.21
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.22
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.23
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.23
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.25
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.26
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.28
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.4
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.43
tlyA 1917972 c.33A>G synonymous_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 0.96
ahpC 2726184 c.-9A>C upstream_gene_variant 0.43
ethA 4326764 p.Ala237Val missense_variant 0.26
gid 4407588 c.615A>G synonymous_variant 0.93