Run ID: SRR5818470
Sample name:
Date: 04-04-2023 11:34:52
Number of reads: 333750
Percentage reads mapped: 95.96
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.34 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rpoB | 760907 | c.1101C>T | synonymous_variant | 0.33 |
rpoB | 760916 | c.1110C>T | synonymous_variant | 0.33 |
rpoB | 760919 | c.1113C>T | synonymous_variant | 0.29 |
rpoB | 760925 | c.1119T>C | synonymous_variant | 0.29 |
rpoB | 760928 | c.1122G>C | synonymous_variant | 0.29 |
rpoB | 760937 | c.1131G>A | synonymous_variant | 0.38 |
rpoB | 760940 | c.1134G>C | synonymous_variant | 0.38 |
rrs | 1472119 | n.274G>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472282 | n.437T>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472286 | n.441C>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472289 | n.444T>G | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472290 | n.445C>G | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472312 | n.468_470delGAT | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472324 | n.479G>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472325 | n.480G>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472328 | n.483G>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472330 | n.485G>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472332 | n.487A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472450 | n.605A>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472451 | n.606C>G | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472461 | n.616G>C | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472462 | n.617T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476253 | n.2596A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918611 | c.672C>T | synonymous_variant | 0.17 |
pncA | 2289047 | c.195C>T | synonymous_variant | 0.36 |
ahpC | 2726184 | c.-9A>C | upstream_gene_variant | 0.36 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.4 |
ethA | 4326148 | c.1326G>T | synonymous_variant | 0.69 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 0.7 |
ethA | 4326764 | p.Ala237Val | missense_variant | 0.24 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.99 |
gid | 4407742 | p.Arg154Pro | missense_variant | 0.51 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.55 |