TB-Profiler result

Run: SRR5818445
Summary

Run ID: SRR5818445

Sample name:

Date: 18-08-2022 12:58:35

Number of reads: 1050748

Percentage reads mapped: 99.56

Strain:

Drug-resistance: Other

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.83 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
rrs 1472119 n.274G>A non_coding_transcript_exon_variant 0.64
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.98
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.98
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.96
rrs 1472282 n.437T>G non_coding_transcript_exon_variant 0.43
rrs 1472284 n.439C>T non_coding_transcript_exon_variant 0.36
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.38
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.37
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.38
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.32
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.16
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.16
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.53
rrs 1472332 n.487A>G non_coding_transcript_exon_variant 0.55
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.57
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.63
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.74
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.86
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.81
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.72
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.67
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.22
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.31
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.26
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.27
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.29
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.3
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.27
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.28
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.28
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.32
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.33
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.32
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.32
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.58
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.92
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.9
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.92
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.92
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.98
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.84
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.86
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.94
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.93
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.85
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.17
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.84
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.54
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.42
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.28
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.25
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.23
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.23
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.23
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.23
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.27
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.32
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.25
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.25
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.32
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.29
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.29
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.29
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.3
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.33
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.42
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.23
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.2
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.19
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.18
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.24
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.29
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.31
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.29
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.29
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.29
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.29
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.29
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.29
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.29
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.31
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.31
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.25
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.19
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.2
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.19
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.25
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.19
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.19
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.19
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.2
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.25
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.25
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.25
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.3
tlyA 1917972 c.33A>G synonymous_variant 1.0
ethA 4326764 p.Ala237Val missense_variant 0.19
gid 4408156 p.Leu16Arg missense_variant 0.95