Run ID: SRR5818442
Sample name:
Date: 04-04-2023 11:30:47
Number of reads: 666661
Percentage reads mapped: 99.62
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.17 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7770 | p.Asp157His | missense_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472450 | n.605A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472451 | n.606C>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472461 | n.616G>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472462 | n.617T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472736 | n.891G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
ahpC | 2726184 | c.-9A>C | upstream_gene_variant | 0.33 |
ethA | 4326764 | p.Ala237Val | missense_variant | 0.31 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |