Run ID: SRR5818405
Sample name:
Date: 04-04-2023 11:21:36
Number of reads: 688056
Percentage reads mapped: 97.22
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6454 | c.-848C>T | upstream_gene_variant | 0.79 |
gyrA | 6721 | c.-581C>T | upstream_gene_variant | 0.8 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
mmpL5 | 779283 | c.-803G>A | upstream_gene_variant | 0.84 |
mmpL5 | 779295 | c.-815A>G | upstream_gene_variant | 0.83 |
mmpR5 | 779431 | p.Asn148Gln | missense_variant | 0.79 |
mmpL5 | 779472 | c.-992G>A | upstream_gene_variant | 0.79 |
mmpS5 | 779523 | c.-618T>A | upstream_gene_variant | 0.74 |
mmpS5 | 779538 | c.-633A>C | upstream_gene_variant | 0.66 |
mmpS5 | 779539 | c.-634C>A | upstream_gene_variant | 0.65 |
rplC | 801267 | c.459A>G | synonymous_variant | 0.77 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.51 |
inhA | 1674816 | c.615T>C | synonymous_variant | 0.68 |
tlyA | 1917812 | c.-128G>A | upstream_gene_variant | 0.6 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
pncA | 2289104 | c.138A>G | synonymous_variant | 0.74 |
ahpC | 2726184 | c.-9A>C | upstream_gene_variant | 0.41 |
embB | 4247590 | c.1077A>G | synonymous_variant | 0.86 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4247815 | c.1302C>T | synonymous_variant | 0.88 |
ethA | 4326463 | c.1011C>T | synonymous_variant | 0.87 |
ethA | 4326740 | p.Arg245His | missense_variant | 0.86 |
ethA | 4326764 | p.Ala237Val | missense_variant | 0.26 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407742 | p.Arg154Pro | missense_variant | 0.29 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.28 |
gid | 4408185 | c.18C>T | synonymous_variant | 0.71 |