Rv1484 - c.615T>C
Drug resistance types
12 Sensitive
11 RR-TB
35 HR-TB
34 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
119 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.9 | 4 |
| lineage2.1;lineage4.9 | 8 |
| M.canetti | 60 |
| lineage4.1.2.1 | 6 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.2.2.2 | 1 |
| lineage4.9 | 34 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| La1.7;lineage4.9 | 6 |
| lineage1.1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.3.4.1 | 2 |
| La3;M.canetti | 2 |
| lineage5.2 | 2 |
| La1;lineage4.1.2 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 7 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 8 | |
| lineage4.9;lineage6.3 | 3 |
| lineage2.2.1 | 6 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4 | 2 |
| lineage4.4.1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.1.3 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.2.1.1 | 2 |
| La1.7 | 1 |
| lineage2.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage3 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 213 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR3597002 | Other | M.canetti | None | SRR5818668 | Other | M.canetti | dj | SRR3675232 | Other | lineage4.1.2.1 | None | SRR24061599 | Other | M.canetti | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR10177263 | Other | M.canetti | None | ERR313117 | Other | M.canetti | None | ERR4816019 | Other | M.canetti | None | SRR3675248 | Other | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR3597007 | Other | M.canetti | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7496472 | Other | lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR5818653 | Other | M.canetti | dj | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR10177262 | Other | M.canetti | None | SRR5818405 | Other | lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR551181 | Sensitive | M.canetti | None | SRR16058674 | Other | M.canetti | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR313114 | Other | M.canetti | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR6044875 | Other | lineage4.9 | None | ERR266122 | Other | La3;M.canetti | None | SRR10177258 | Other | M.canetti | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR266108 | Other | M.canetti | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR5311083 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR10177261 | Other | M.canetti | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9117709 | Other | None | ERR234659 | HR-TB | None | ERR2514692 | Other | None | ERR9787197 | Other | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR266109 | Other | M.canetti | None | ERR4815361 | Other | M.canetti | None | ERR3597005 | Other | M.canetti | None | ERR551055 | Other | M.canetti | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR313116 | Other | M.canetti | None | ERR266120 | Other | M.canetti | None | SRR5818614 | Other | M.canetti | dj | ERR4821655 | HR-TB | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR266121 | Other | M.canetti | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR552305 | Other | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR551180 | Sensitive | M.canetti | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1336822 | Sensitive | M.canetti | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR9125475 | Other | M.canetti | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR14066533 | RR-TB | lineage1.1.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR5818385 | Other | lineage4.9 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675222 | Other | La1.7 | None | SRR6650709 | Other | M.canetti | None | SRR10808730 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR7451301 | Other | M.canetti | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR10177260 | Other | M.canetti | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR22179528 | Other | M.canetti | None | SRR28170812 | Other | M.canetti | None | SRR28351584 | HR-TB | lineage2.2.1 | None | SRR18213713 | HR-TB | None | SRR18289196 | Other | M.canetti | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR266106 | Other | M.canetti | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR266107 | Other | M.canetti | None | ERR3597001 | Other | M.canetti | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR16058668 | Other | M.canetti | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR552304 | Other | M.canetti | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675214 | Other | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR4819927 | Other | M.canetti | None | ERR552307 | Other | M.canetti | None | SRR10177259 | Other | M.canetti | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4821046 | Other | M.canetti | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR9125480 | Other | M.canetti | None | ERR313115 | Other | M.canetti | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR551057 | Other | M.canetti | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR4817181 | Other | M.canetti | None | ERR323107 | HR-TB | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR24061598 | Other | M.canetti | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR5818661 | Other | M.canetti | dj | ERR551056 | Other | M.canetti | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5818605 | Other | M.canetti | None | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR3283021 | MDR-TB | lineage4.9 | None | ERR551179 | Sensitive | M.canetti | None | ERR181824 | MDR-TB | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR6789626 | Other | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR3597004 | Sensitive | M.canetti | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR3597003 | Other | M.canetti | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR24061600 | Other | M.canetti | None | SRR5818446 | Other | lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR266110 | Other | M.canetti | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR10522783 | Sensitive | M.canetti | None | ERR313113 | Other | M.canetti | None | SRR5818652 | Other | M.canetti | dj | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None |
|---|
