TB-Profiler result

Run: SRR5818444
Summary

Run ID: SRR5818444

Sample name:

Date: 04-04-2023 11:32:24

Number of reads: 908633

Percentage reads mapped: 99.63

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.46
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.39
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.33
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.12
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.26
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.29
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.29
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.18
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.24
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918701 c.762G>A synonymous_variant 0.13
tlyA 1918718 p.Val260Ala missense_variant 0.13
pncA 2289047 c.195C>T synonymous_variant 0.94
ahpC 2726184 c.-9A>C upstream_gene_variant 0.43
ethA 4326764 p.Ala237Val missense_variant 0.31
gid 4407588 c.615A>G synonymous_variant 1.0