Rv3795 - c.3127T>C
Drug resistance types
7 Sensitive
4 RR-TB
22 HR-TB
14 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
106 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage7 | 3 |
| La1.3 | 67 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 8 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| 8 | |
| lineage4.9 | 9 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.9 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4.3.2.1 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 155 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4772228 | Other | La1.3 | None | SRR8063658 | Other | La1.3 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4769420 | Other | La1.3 | None | ERR4769426 | Other | La1.3 | None | ERR4772217 | Other | La1.3 | None | ERR4809089 | Sensitive | lineage2.2.1 | za | ERR4769560 | Other | La1.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR8063666 | Other | La1.3 | None | ERR4772207 | Other | La1.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR8063664 | Other | La1.3 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4769403 | Other | La1.3 | None | SRR8063665 | Other | La1.3 | None | SRR8063659 | Other | La1.3 | None | ERR3276190 | Other | La1.3 | nl | ERR4769394 | Other | La1.3 | None | ERR4769462 | Other | La1.3 | None | ERR4769495 | Other | La1.3 | None | ERR4769407 | Other | La1.3 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR6358991 | HR-TB | None | ERR4810741 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4769395 | Other | La1.3 | None | ERR4769449 | Other | La1.3 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR2815552 | Other | La1.3 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR13267629 | Other | La1.3 | None | ERR4772213 | Other | La1.3 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4769466 | Other | La1.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4772216 | Other | La1.3 | None | ERR4821505 | Other | La1.3 | gb | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR4769447 | Other | La1.3 | None | SRR8063656 | Other | La1.3 | None | ERR4769405 | Other | La1.3 | None | ERR4769399 | Other | La1.3 | None | ERR4769524 | Other | La1.3 | None | ERR2660501 | Sensitive | lineage2.2.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4769451 | Other | La1.3 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR4769408 | Other | La1.3 | None | SRR21690094 | Other | La1.3 | None | ERR4769520 | Other | La1.3 | None | ERR10748523 | RR-TB | lineage2.2.1 | None | SRR8063654 | Other | La1.3 | None | ERR3276011 | Other | La1.3 | nl | ERR2027263 | Other | lineage4 | None | ERR11043452 | Other | La1.3 | None | ERR4811105 | HR-TB | None | ERR4811075 | Other | None | SRR8063653 | Other | La1.3 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4769453 | Other | La1.3 | None | ERR4769458 | Other | La1.3 | None | ERR4769456 | Other | La1.3 | None | ERR4769480 | Other | La1.3 | None | ERR4769517 | Other | La1.3 | None | SRR28119753 | Other | lineage4.9 | None | ERR4811311 | Other | None | ERR4769422 | Other | La1.3 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4772231 | Other | La1.3 | None | ERR4772208 | Other | La1.3 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR4772214 | Other | La1.3 | None | ERR4772222 | Other | La1.3 | None | ERR4769401 | Other | La1.3 | None | ERR4772215 | Other | La1.3 | None | ERR7821148 | Sensitive | lineage2.2.1 | None | ERR4769555 | Sensitive | La1.3 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4772224 | Other | La1.3 | None | ERR9786604 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR4769491 | Other | La1.3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4769559 | Other | La1.3 | None | SRR21887704 | MDR-TB | lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR387051 | Other | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR8063661 | Other | La1.3 | None | ERR4772227 | Other | La1.3 | None | ERR4769397 | Other | La1.3 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR4769396 | Other | La1.3 | None | SRR8063663 | Other | La1.3 | None | ERR4769413 | Other | La1.3 | None | SRR29093717 | Other | La1.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4769402 | Other | La1.3 | None | ERR212123 | Other | lineage4.9 | None | SRR8063657 | Other | La1.3 | None | ERR4769436 | Other | La1.3 | None | ERR2660542 | Sensitive | lineage2.2.1;lineage4.3.2.1 | None | ERR4769498 | Other | La1.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR8976043 | HR-TB | lineage2.2 | None | ERR4769404 | Other | La1.3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR28119752 | Other | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR4769514 | Other | La1.3 | None | SRR25827682 | Other | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
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