EBG00000313325 - n.1012A>G
Drug resistance types
131 Sensitive
37 RR-TB
70 HR-TB
27 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
96 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.5 | 2 |
| lineage3 | 146 |
| lineage2.2.1 | 21 |
| lineage2.2.1.1 | 3 |
| lineage4.9 | 33 |
| lineage4 | 50 |
| 44 | |
| lineage4;lineage2.2 | 1 |
| lineage4.3.4 | 2 |
| lineage2.1 | 4 |
| lineage4.8 | 12 |
| La1.2.BCG | 1 |
| lineage4.6.2.2 | 2 |
| lineage4;lineage3 | 1 |
| lineage4.3.4.2.1;lineage3 | 1 |
| lineage1.1.2 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.3 | 4 |
| lineage1.1.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| La2 | 1 |
| La1.8.1 | 4 |
| lineage4.1.2 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.1.2.1 | 3 |
| La1.2 | 1 |
| La1.3 | 3 |
| lineage4.9;La1.3 | 1 |
| La1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2 | 2 |
| lineage3.1.3 | 1 |
| lineage6 | 2 |
| lineage6.1.3 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.6.1.2;lineage4.2;lineage3 | 1 |
| lineage4.4.2 | 2 |
| lineage4.2.1 | 2 |
| La1.7.1 | 1 |
| lineage4;lineage3.1.1;lineage1.1.2 | 2 |
| lineage4.6.1.1;lineage3.1.1;lineage1.1.2 | 1 |
| lineage4.3.4.2.1;lineage3.1.1;lineage1.1.2 | 1 |
| lineage4.6.1.1;lineage4.3;lineage3.1.1;lineage1.1.2 | 1 |
| lineage4.6.1;lineage3.1.1;lineage2.2.1;lineage1.1.2 | 1 |
| lineage4.3.4;lineage3.1.1;lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 377 |
Geographic prevalence
Country level data for this variant is available for 29 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR21713567 | Sensitive | lineage4.5 | None | ERR11068150 | Sensitive | lineage3 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR11068145 | Other | lineage3 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692879 | HR-TB | lineage4.9 | None | ERR11082257 | Sensitive | lineage3 | None | SRR8692816 | Other | lineage4.9 | None | SRR8692868 | Sensitive | lineage4.9 | None | ERR11068958 | Sensitive | lineage3 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692894 | Other | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692818 | Other | lineage4.9 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692888 | Other | lineage4.9 | None | SRR8692871 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR26800481 | Sensitive | lineage3 | None | SRR8692899 | Other | lineage4.9 | None | SRR26800455 | HR-TB | lineage3 | None | SRR26800456 | Sensitive | lineage3 | None | ERR4815556 | RR-TB | lineage3 | None | SRR26800466 | HR-TB | lineage3 | None | SRR26800492 | Sensitive | lineage3 | None | SRR27450548 | Sensitive | lineage3 | None | SRR3675488 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675222 | Other | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4814976 | Other | lineage4.9 | None | SRR26800453 | Sensitive | lineage3 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR3675246 | Sensitive | lineage4 | None | ERR233347 | Sensitive | lineage3 | None | ERR176740 | HR-TB | None | SRR3675509 | Other | lineage4.9 | None | ERR4815751 | Sensitive | lineage3 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4816090 | Other | La1.2.BCG | None | ERR4817069 | RR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212034 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | SRR3675571 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816656 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR038743 | RR-TB | lineage3 | ug | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR040129 | MDR-TB | lineage3 | ug | ERR040118 | MDR-TB | lineage3 | ug | ERR040139 | MDR-TB | lineage3 | ug | ERR040140 | Pre-XDR-TB | lineage3 | ug | ERR040141 | MDR-TB | lineage3 | ug | ERR040136 | MDR-TB | lineage3 | ug | ERR228213 | Other | lineage4;lineage3 | None | ERR4816852 | Other | lineage4.9 | None | ERR190343 | Sensitive | lineage4.3.4.2.1;lineage3 | mw | ERR181952 | Sensitive | lineage3 | mw | ERR4818110 | Sensitive | lineage4.9 | None | SAMEA3450033 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR3275555 | Sensitive | lineage3 | nl | ERR2432997 | Other | lineage4.8 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341453 | Sensitive | None | ERR4819051 | Other | lineage4 | None | ERR2513259 | Other | lineage3 | None | ERR4818929 | HR-TB | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4818583 | Other | lineage4.3.3 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR5341366 | Sensitive | lineage4 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR2514125 | Other | lineage3 | None | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR6397583 | RR-TB | lineage3 | ca | SRR2100827 | HR-TB | lineage3 | None | SRR6397953 | RR-TB | lineage3 | ca | ERR2514305 | Other | lineage3 | None | SRR5341432 | HR-TB | lineage4 | None | SRR6397682 | Sensitive | lineage3 | ca | SRR5341299 | Sensitive | lineage4 | None | ERR4819754 | Sensitive | lineage3 | None | SAMN02380991 | Other | lineage3 | ug | SRR5341293 | HR-TB | lineage4 | None | SAMN02381000 | Sensitive | lineage3 | ug | SAMN02381007 | RR-TB | lineage3 | ug | SAMN02381020 | HR-TB | lineage3 | ug | SRR5341298 | Sensitive | lineage4 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4820484 | Other | lineage4.8 | None | SRR6397731 | RR-TB | lineage3 | ca | SRR5341455 | Sensitive | lineage4 | None | SAMN02381017 | Sensitive | lineage3 | ug | SRR6397813 | Sensitive | lineage3 | ca | SRR5341300 | Other | lineage4 | None | SRR6397506 | RR-TB | lineage3 | ca | SRR5341303 | RR-TB | lineage4 | None | SRR2100044 | Sensitive | lineage3 | None | SRR5341313 | HR-TB | None | SRR6397649 | RR-TB | lineage3 | ca | SRR5341308 | Sensitive | lineage4 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341315 | Sensitive | None | ERR2706996 | RR-TB | lineage3 | cd | ERR6359082 | Other | lineage4.9 | None | ERR4820096 | Sensitive | lineage3 | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446311 | Sensitive | lineage3 | nl | SRR5341469 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR6045519 | HR-TB | None | ERR270717 | HR-TB | lineage3 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | ERR11049774 | Sensitive | lineage3 | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | ERR4822629 | Other | lineage3 | None | ERR2851354 | RR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR2517625 | Sensitive | lineage3 | nl | SRR6046492 | Other | None | ERR1200609 | Sensitive | lineage3 | et | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR4832002 | Pre-XDR-TB | lineage2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR11465929 | RR-TB | lineage3 | None | ERR294266 | HR-TB | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR5087623 | Other | La1.8.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7535037 | Sensitive | lineage3 | None | SRR7535088 | Sensitive | lineage3 | None | SRR7535082 | Sensitive | lineage4 | None | ERR10219878 | Pre-XDR-TB | lineage2.2.1 | None | SRR7535089 | Sensitive | lineage3 | None | SRR7535091 | Sensitive | lineage3 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR323053 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | DRR034348 | Other | lineage2.2.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR7535078 | Other | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1007898 | HR-TB | lineage3 | None | ERR1035122 | Sensitive | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063896 | Sensitive | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR133825 | Sensitive | lineage4 | None | ERR10796571 | Other | lineage4.9 | None | ERR4820586 | Other | lineage3 | gb | ERR10796628 | Other | lineage4.3.3 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR11044652 | Sensitive | lineage3 | None | ERR137286 | Sensitive | lineage4 | None | ERR3445501 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3439265 | Other | lineage4.9 | None | ERR4024991 | Other | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797043 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4423679 | MDR-TB | lineage3 | None | ERR405192 | Sensitive | lineage3 | None | ERR4188247 | HR-TB | None | ERR4407539 | Other | lineage4.1.2.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR4423724 | RR-TB | lineage3 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4423678 | MDR-TB | lineage3 | None | ERR4423739 | MDR-TB | lineage3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769418 | Other | La1.2 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769517 | Other | La1.3 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769495 | Other | La1.3 | None | ERR4798262 | HR-TB | La1 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR2513685 | Sensitive | lineage3 | gb | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR5979452 | MDR-TB | lineage3 | None | ERR11049590 | Sensitive | lineage3 | None | ERR5979437 | Sensitive | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR5979447 | Sensitive | lineage3 | None | ERR6866022 | Other | None | ERR5979455 | Sensitive | lineage3 | None | ERR736856 | HR-TB | lineage4 | None | ERR6866639 | Other | None | ERR7361955 | Sensitive | lineage3 | None | ERR736834 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR9125738 | Sensitive | lineage3 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR2145508 | MDR-TB | lineage3 | None | SRR21732585 | Sensitive | lineage3 | None | ERR9117748 | Other | lineage3 | None | ERR9285857 | Other | lineage3 | None | ERR9285820 | Sensitive | lineage3 | None | ERR9285892 | Sensitive | lineage3 | None | ERR9285851 | HR-TB | lineage3 | None | ERR9285858 | Sensitive | lineage3 | None | ERR9285890 | Sensitive | lineage3 | None | ERR9286093 | Sensitive | lineage3 | None | ERR9285921 | Sensitive | lineage3 | None | ERR9285901 | Sensitive | lineage3 | None | ERR9285959 | Sensitive | lineage3 | None | ERR9286076 | MDR-TB | lineage3 | None | ERR9286121 | Sensitive | lineage3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR9787362 | Sensitive | lineage6 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787033 | Sensitive | lineage6 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987722 | HR-TB | None | ERR987719 | HR-TB | lineage3 | None | ERR987742 | HR-TB | lineage3 | None | ERR987724 | RR-TB | lineage3 | None | ERR987770 | HR-TB | None | ERR987753 | HR-TB | lineage4.6.1.2;lineage4.2;lineage3 | None | ERR990541 | Sensitive | lineage3 | None | ERR990540 | Sensitive | lineage3 | None | ERR987783 | HR-TB | lineage3 | None | ERR990546 | Sensitive | lineage3 | None | ERR990542 | Sensitive | lineage3 | None | ERR990539 | Sensitive | lineage3 | None | ERR990545 | Other | lineage3 | None | ERR990552 | Sensitive | lineage3 | None | SRR1049583 | Other | lineage3 | None | ERR990551 | Sensitive | lineage3 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049584 | Other | lineage3 | None | SRR1049618 | RR-TB | lineage3 | None | SRR1049603 | Sensitive | lineage3 | None | SRR1049604 | Sensitive | lineage3 | None | SRR1049619 | RR-TB | lineage3 | None | SRR1062899 | Sensitive | lineage3 | None | SRR1049639 | Sensitive | lineage3 | None | SRR1049640 | Sensitive | lineage3 | None | SRR1062890 | Sensitive | lineage3 | None | SRR1062900 | RR-TB | lineage3 | None | SRR1062881 | Other | lineage3 | None | SRR11294512 | Other | La1.8.1 | None | SRR1062907 | Sensitive | lineage3 | None | SRR1062910 | HR-TB | lineage3 | None | SRR11349143 | Sensitive | lineage4.1.2 | None | SRR1140570 | Sensitive | lineage3 | None | SRR1140640 | HR-TB | lineage3 | None | SRR1140693 | Sensitive | lineage3 | None | SRR1140682 | RR-TB | lineage3 | None | SRR1140657 | Other | lineage3 | None | SRR1173279 | Sensitive | lineage3 | None | SRR1140719 | Sensitive | lineage3 | None | SRR1158918 | Sensitive | lineage4 | None | ERR11050311 | HR-TB | lineage3 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173777 | Other | lineage4 | None | SRR1173740 | Other | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173334 | MDR-TB | lineage3 | None | SRR1173568 | Other | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1174282 | MDR-TB | lineage3 | None | SRR1173856 | Sensitive | lineage3 | None | SRR12634554 | Sensitive | lineage3 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12634546 | HR-TB | lineage3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972327 | Pre-XDR-TB | lineage2.2.1 | None | SRR12634572 | Sensitive | lineage3 | None | SRR12634570 | Sensitive | lineage3 | None | SRR12634568 | Sensitive | lineage3 | None | SRR12634624 | Sensitive | lineage3 | None | SRR12634595 | Sensitive | lineage3 | None | SRR12882266 | Sensitive | lineage3 | None | SRR12634617 | Other | lineage3 | None | ERR11050495 | Sensitive | lineage3 | None | SRR12882634 | Sensitive | lineage3 | None | SRR12882636 | MDR-TB | lineage3 | None | SRR12882715 | Sensitive | lineage3 | None | SRR12882765 | Sensitive | lineage3 | None | SRR12882758 | Sensitive | lineage3 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR14782405 | HR-TB | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR16058004 | Sensitive | lineage3 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR18913779 | Other | lineage3 | None | SRR19409781 | Sensitive | lineage4;lineage3.1.1;lineage1.1.2 | None | SRR19392723 | Sensitive | lineage4.6.1.1;lineage3.1.1;lineage1.1.2 | None | SRR19428570 | Other | lineage3 | None | SRR19415520 | Sensitive | lineage4;lineage3.1.1;lineage1.1.2 | None | SRR19428517 | Sensitive | lineage4.3.4.2.1;lineage3.1.1;lineage1.1.2 | None | SRR19428585 | Sensitive | lineage4.6.1.1;lineage4.3;lineage3.1.1;lineage1.1.2 | None | SRR19428598 | Sensitive | lineage4.6.1;lineage3.1.1;lineage2.2.1;lineage1.1.2 | None | SRR19428603 | Sensitive | lineage4.3.4;lineage3.1.1;lineage1.1.2 | None | SRR20632814 | Sensitive | lineage4 | None |
|---|
