Run ID: ERR11050495
Sample name:
Date: 03-04-2023 07:14:36
Number of reads: 5914268
Percentage reads mapped: 99.45
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.21 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.24 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.25 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.23 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.21 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.18 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472857 | n.1012A>G | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.31 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918066 | p.Ala43Pro | missense_variant | 0.19 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.32 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.25 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.14 |
Rv2752c | 3064823 | p.Val457Leu | missense_variant | 0.16 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.57 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.21 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.16 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.21 |
fbiB | 3642098 | c.564G>A | synonymous_variant | 1.0 |
alr | 3840636 | p.Pro262Gln | missense_variant | 1.0 |
rpoA | 3878590 | c.-83G>C | upstream_gene_variant | 0.21 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.18 |
rpoA | 3878622 | c.-115C>G | upstream_gene_variant | 1.0 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.69 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.39 |
embC | 4241335 | p.Gln491His | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245883 | p.Gly884Asp | missense_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.34 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.15 |
embB | 4248561 | p.Ala683Val | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |