lineage | Count |
---|---|
lineage2.2.1 | 66 |
lineage2.2.2 | 44 |
lineage4.2.2.2 | 20 |
lineage4.6.3 | 1 |
lineage3 | 58 |
lineage3;lineage4 | 3 |
lineage4.1.2.1 | 9 |
lineage4.8 | 5 |
lineage4.3.2 | 2 |
lineage1.1.1.1 | 1 |
lineage2.1 | 1 |
lineage3.1 | 5 |
lineage2.2.1.1 | 5 |
lineage3.1.2 | 4 |
lineage3.1.2.1 | 1 |
lineage4.4.2 | 3 |
lineage1.1.2 | 1 |
lineage4.2.1 | 2 |
lineage1.2.2.2 | 1 |
lineage4.6.2.2 | 1 |
lineage2.2.1;lineage4.5 | 1 |
lineage4.1.1.1 | 1 |
lineage2.2.1;lineage4.4.2 | 1 |
spoligotype | Count |
---|---|
None | 236 |
ID | Drug resistance | Lineage | Country iso2 | SRR13423563 | MDR-TB | lineage2.2.1 | None | ERR4819007 | Other | lineage2.2.1 | None | SRR23691399 | Sensitive | lineage2.2.2 | None | DRR473762 | Sensitive | lineage2.2.1 | None | ERR4830822 | Pre-XDR-TB | lineage4.2.2.2 | et | SRR11662504 | MDR-TB | lineage2.2.1 | None | SRR27332348 | Sensitive | lineage4.6.3 | None | ERR11050495 | Sensitive | lineage3 | None | ERR228213 | Other | lineage3;lineage4 | None | ERR3275463 | Sensitive | lineage4.1.2.1 | nl | ERR11082257 | Sensitive | lineage3 | None | SRR7655615 | Sensitive | lineage4.8 | None | ERR2516620 | Sensitive | lineage4.3.2 | pe | SRR29096677 | Sensitive | lineage3 | None | ERR13194025 | MDR-TB | lineage2.2.2 | None | ERR4799143 | Other | lineage3 | None | SRR1165366 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR22250097 | HR-TB | lineage1.1.1.1 | None | SRR1167151 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR6824451 | MDR-TB | lineage2.2.1 | cn | SRR3725715 | Sensitive | lineage3 | None | SRR26112807 | Sensitive | lineage2.2.2 | None | SRR6824633 | MDR-TB | lineage2.2.1 | cn | ERR4830898 | MDR-TB | lineage2.2.1 | None | SRR10040230 | MDR-TB | lineage2.1 | None | ERR6866729 | Sensitive | lineage2.2.1 | None | ERR228180 | Sensitive | lineage3 | None | SRR2100537 | Sensitive | lineage3 | None | SRR22351876 | Pre-XDR-TB | lineage2.2.1 | None | ERR5979435 | Pre-XDR-TB | lineage3.1 | None | SRR21722060 | Sensitive | lineage2.2.1 | None | ERR2512446 | Sensitive | lineage4.1.2.1 | gb | ERR400541 | Sensitive | lineage3 | gb | SRR1013662 | Pre-XDR-TB | lineage2.2.2 | None | ERR2513843 | Sensitive | lineage3 | gb | SRR26112511 | Sensitive | lineage2.2.1 | None | ERR13290834 | RR-TB | lineage2.2.1 | None | SRR16370661 | Sensitive | lineage2.2.2 | None | SRR25207347 | MDR-TB | lineage2.2.1 | None | ERR9285857 | Sensitive | lineage3 | None | SRR1049058 | Pre-XDR-TB | lineage2.2.2 | None | ERR13191065 | MDR-TB | lineage2.2.2 | None | ERR13194049 | MDR-TB | lineage2.2.2 | None | ERR4799208 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR25207213 | MDR-TB | lineage2.2.1 | None | ERR1465808 | Sensitive | lineage4.1.2.1 | rs | ERR4820811 | Sensitive | lineage3 | gb | ERR13194859 | MDR-TB | lineage2.2.2 | None | SAMN02360596 | Pre-XDR-TB | lineage2.2.2 | kr | SRR21677625 | MDR-TB | lineage2.2.2 | None | ERR9285858 | Sensitive | lineage3 | None | SRR6824475 | MDR-TB | lineage2.2.1 | cn | SRR29093926 | MDR-TB | lineage2.2.2 | None | ERR3275336 | MDR-TB | lineage4.2.2.2 | nl | SRR1049028 | Pre-XDR-TB | lineage2.2.2 | None | ERR4815826 | Sensitive | lineage3 | gb | SRR29440812 | Sensitive | lineage3 | None | ERR4830803 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR4831630 | MDR-TB | lineage2.2.1 | vn | ERR13191369 | Pre-XDR-TB | lineage2.2.2 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR1723604 | MDR-TB | lineage2.2.1 | None | ERR4820400 | HR-TB | lineage3 | gb | ERR4822610 | Pre-XDR-TB | lineage3.1 | de | SRR29440798 | Sensitive | lineage2.2.1 | None | ERR4011971 | MDR-TB | lineage4.2.2.2 | None | SRR10315557 | Sensitive | lineage2.2.1 | None | ERR13243569 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360610 | Pre-XDR-TB | lineage2.2.2 | kr | SRR1723539 | MDR-TB | lineage2.2.1 | None | SRR2024956 | Pre-XDR-TB | lineage2.2.1 | cn | SRR29093380 | Pre-XDR-TB | lineage2.2.2 | None | SRR30182616 | Sensitive | lineage2.2.1 | None | SRR12142372 | MDR-TB | lineage2.2.1 | None | ERR13267372 | Sensitive | lineage2.2.1 | None | ERR4830805 | MDR-TB | lineage4.2.2.2 | et | ERR4820729 | Sensitive | lineage2.2.1 | None | SRR28046256 | Sensitive | lineage3 | None | SRR1013632 | Pre-XDR-TB | lineage2.2.2 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR4830799 | MDR-TB | lineage4.2.2.2 | et | ERR4819181 | Sensitive | lineage3 | gb | ERR9286070 | Sensitive | lineage3 | None | ERR4276907 | Pre-XDR-TB | lineage3.1 | None | ERR4800307 | Sensitive | lineage3 | in | SAMN02414970 | Pre-XDR-TB | lineage4.2.2.2 | se | ERR4822606 | Pre-XDR-TB | lineage3.1 | de | SRR1173856 | Sensitive | lineage3 | None | ERR4798462 | MDR-TB | lineage3.1.2 | in | ERR2513685 | Sensitive | lineage3 | gb | SRR7654039 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816025 | Sensitive | lineage3 | None | SRR29356788 | MDR-TB | lineage2.2.1 | None | DRR188563 | Sensitive | lineage2.2.1 | None | ERR13290598 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR13195056 | MDR-TB | lineage2.2.2 | None | ERR867564 | Sensitive | lineage3 | None | DRR473915 | HR-TB | lineage2.2.2 | None | SRR16088059 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799739 | MDR-TB | lineage2.2.1.1 | in | ERR108171 | Sensitive | lineage2.2.1.1 | za | SRR12142387 | HR-TB | lineage2.2.1 | None | SRR13423593 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576602 | RR-TB | lineage2.2.1 | None | DRR130156 | MDR-TB | lineage2.2.1 | None | SRR29231468 | Sensitive | lineage3 | None | ERR13195616 | Pre-XDR-TB | lineage2.2.2 | None | ERR13296451 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013631 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360555 | Pre-XDR-TB | lineage2.2.2 | kr | SRR1144737 | Pre-XDR-TB | lineage2.2.2 | None | ERR5979455 | Sensitive | lineage3 | None | ERR2516481 | Sensitive | lineage4.3.2 | pe | SRR27450321 | Sensitive | lineage3 | None | DRR474026 | Sensitive | lineage2.2.2 | None | SRR21001884 | Pre-XDR-TB | lineage2.2.1 | None | SRR2100445 | Sensitive | lineage3 | None | SRR27332357 | Sensitive | lineage3 | None | ERR11067253 | MDR-TB | lineage4.8 | None | ERR9285901 | Sensitive | lineage3 | None | ERR11044652 | Sensitive | lineage3 | None | SRR16088566 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251790 | MDR-TB | lineage2.2.1 | None | SRR26056445 | Sensitive | lineage3 | None | ERR13261091 | Other | lineage3.1.2.1 | None | SRR7654036 | Sensitive | lineage4.8 | None | SRR27069422 | Pre-XDR-TB | lineage2.2.1 | None | ERR2514923 | Sensitive | lineage3 | gb | ERR13290600 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR2517569 | MDR-TB | lineage4.2.2.2 | nl | ERR987742 | HR-TB | lineage3 | None | ERR2446350 | Sensitive | lineage4.1.2.1 | nl | SRR25515072 | Other | lineage4.4.2 | None | ERR7911506 | MDR-TB | lineage2.2.1 | vn | ERR9286107 | Sensitive | lineage3 | None | SRR1049059 | Pre-XDR-TB | lineage2.2.2 | None | SRR29231257 | Sensitive | lineage3 | None | ERR2510349 | HR-TB | lineage3 | pk | SRR29440917 | Sensitive | lineage3 | None | ERR13265094 | Pre-XDR-TB | lineage2.2.2 | None | SRR30182764 | Sensitive | lineage2.2.1 | None | SRR7655613 | Sensitive | lineage4.8 | None | SRR28045968 | Sensitive | lineage1.1.2 | None | ERR13230057 | Other | lineage2.2.2 | None | ERR13195561 | MDR-TB | lineage2.2.2 | None | SRR14801292 | MDR-TB | lineage4.2.1 | None | ERR3275335 | Sensitive | lineage4.1.2.1 | nl | ERR867558 | Sensitive | lineage3 | None | ERR7361955 | Other | lineage3 | None | ERR13192113 | MDR-TB | lineage2.2.2 | None | ERR117671 | RR-TB | lineage3.1.2 | None | SRR15316200 | Sensitive | lineage2.2.1 | None | SRR1166935 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR1162897 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR13194006 | MDR-TB | lineage2.2.2 | None | SRR20969948 | Sensitive | lineage2.2.1 | None | SRR15315780 | Sensitive | lineage2.2.1 | None | SRR2100044 | Sensitive | lineage3 | None | SRR2100398 | RR-TB | lineage3.1.2 | None | ERR11044466 | Sensitive | lineage3 | None | ERR2517213 | Sensitive | lineage4.1.2.1 | nl | SAMN02398699 | Pre-XDR-TB | lineage2.2.2 | kr | SRR10040431 | MDR-TB | lineage2.2.1 | None | SRR1049029 | Pre-XDR-TB | lineage2.2.2 | None | SRR21689578 | Sensitive | lineage3 | None | SRR25207137 | RR-TB | lineage2.2.1 | None | SRR11972427 | Pre-XDR-TB | lineage2.2.1 | None | SAMN03246349 | MDR-TB | lineage2.2.1 | cn | ERR9285892 | Sensitive | lineage3 | None | SRR29096957 | Sensitive | lineage3;lineage4 | None | SRR19428570 | Other | lineage3 | None | ERR751857 | Sensitive | lineage1.2.2.2 | th | SRR1173279 | Sensitive | lineage3 | None | SRR5710016 | Pre-XDR-TB | lineage2.2.1.1 | th | SRR1013552 | Pre-XDR-TB | lineage2.2.2 | None | SRR2024935 | MDR-TB | lineage2.2.1 | cn | SRR1723605 | MDR-TB | lineage2.2.1 | None | SRR21001885 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069030 | Other | lineage3 | None | ERR4830830 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR7737624 | MDR-TB | lineage4.2.2.2 | None | SRR22249661 | MDR-TB | lineage4.6.2.2 | None | ERR2517644 | Sensitive | lineage4.1.2.1 | nl | ERR13296461 | MDR-TB | lineage2.2.2 | None | SRR26112061 | Sensitive | lineage2.2.1 | None | ERR13191098 | MDR-TB | lineage2.2.2 | None | ERR752087 | HR-TB | lineage2.2.1 | th | SRR18591742 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013551 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048851 | Pre-XDR-TB | lineage2.2.2 | None | SRR25534143 | Sensitive | lineage2.2.1 | None | ERR2446183 | MDR-TB | lineage4.2.2.2 | nl | SRR29096523 | MDR-TB | lineage4.2.2.2 | None | ERR4822609 | Pre-XDR-TB | lineage3.1 | de | ERR11082915 | Sensitive | lineage4.8 | None | ERR4811366 | MDR-TB | lineage2.2.1 | None | ERR4830845 | MDR-TB | lineage4.2.2.2 | et | ERR2512421 | Other | lineage3;lineage4 | gb | SRR21690857 | Sensitive | lineage3 | None | SRR6824646 | MDR-TB | lineage2.2.1;lineage4.5 | cn | SRR12142414 | MDR-TB | lineage2.2.1 | None | SRR7069467 | Sensitive | lineage3 | None | ERR13195379 | MDR-TB | lineage2.2.2 | None | ERR4810968 | Pre-XDR-TB | lineage2.2.1 | cn | SRR24222952 | MDR-TB | lineage2.2.1 | None | SRR20969582 | Sensitive | lineage2.2.1 | None | SRR12882266 | Sensitive | lineage3 | None | ERR2446178 | Sensitive | lineage4.1.2.1 | nl | SRR19267893 | Sensitive | lineage2.2.2 | None | ERR4195747 | Sensitive | lineage4.1.2.1 | None | SRR28045190 | Sensitive | lineage3 | None | ERR11775824 | Sensitive | lineage3 | None | SRR1048850 | Pre-XDR-TB | lineage2.2.2 | None | ERR13290852 | RR-TB | lineage2.2.1 | None | SRR29440647 | Sensitive | lineage3 | None | SRR30182445 | Sensitive | lineage2.2.1 | None | SRR30182758 | Sensitive | lineage2.2.1 | None | SRR30182850 | Sensitive | lineage2.2.1 | None | ERR4800299 | Other | lineage3.1.2 | in | SRR28044432 | Sensitive | lineage3 | None | DRR188638 | Sensitive | lineage2.2.1 | None | ERR1007898 | HR-TB | lineage3 | None | ERR2514514 | Other | lineage3 | gb | ERR7737654 | MDR-TB | lineage4.2.2.2 | None | SRR6785496 | MDR-TB | lineage2.2.1 | None | ERR4403842 | RR-TB | lineage2.2.1 | None | SRR20969586 | MDR-TB | lineage2.2.1 | None | SRR21675610 | Sensitive | lineage4.4.2 | None | SRR6046457 | Other | lineage3 | gb | SRR14801420 | MDR-TB | lineage4.2.1 | None | ERR11082972 | Sensitive | lineage3 | None | DRR474022 | Sensitive | lineage2.2.2 | None | ERR10748519 | MDR-TB | lineage4.1.1.1 | None | SRR29096251 | Sensitive | lineage3 | None | SRR29053340 | Sensitive | lineage4.4.2 | None | SRR6824702 | MDR-TB | lineage2.2.1;lineage4.4.2 | cn |
---|