Run ID: ERR4820729
Sample name:
Date: 01-04-2023 16:50:53
Number of reads: 4399563
Percentage reads mapped: 99.14
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.45 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.38 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.34 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1416306 | c.1041delC | frameshift_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472123 | n.278A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472574 | n.729T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473163 | n.1318C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474182 | n.525C>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474183 | n.526T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474185 | n.529delA | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474837 | n.1180A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474901 | n.1244A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474903 | n.1246T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475993 | n.2336C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476307 | n.2650A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476309 | n.2652G>T | non_coding_transcript_exon_variant | 0.17 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.99 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethA | 4326676 | p.Ser266Arg | missense_variant | 0.71 |
whiB6 | 4338537 | c.-16T>C | upstream_gene_variant | 0.63 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |
gid | 4408382 | c.-180A>G | upstream_gene_variant | 0.75 |