Rv3596c - c.1773G>C


Drug resistance types
73 Sensitive 21 RR-TB 79 HR-TB 46 MDR-TB 4 Pre-XDR-TB 0 XDR-TB 73 Other
lineage Counts
lineage Count
lineage4.1.2.1 14
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La1.8.1 4
La1.7.1;lineage4.9 1
lineage4.9 115
lineage2.2.1 12
M.canetti;lineage2.1;lineage4.9 24
lineage3 4
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.4.1.2 1
lineage6.1.2 1
La1.2.BCG 1
M.canetti;lineage2.1;lineage3 1
lineage4.3.4.2.1 4
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.1.1.3;lineage4.9 2
2
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage4.2.1 1
lineage4.6.1.1 2
lineage4.5 3
lineage4.2.1.1;lineage4.3.3 1
lineage4.3.4 1
lineage2.1;lineage4.9 5
La1.7.X-unk4;lineage4.9 1
La2;lineage2.2 1
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage2.1;lineage4.3.2 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.7.1 2
lineage4.8 2
lineage2.2.1.1 1
lineage2.2;lineage4.9 1
lineage4.1;lineage4.9 1
lineage4.4.1.1 2
lineage1.1.2;lineage4 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage2.1;lineage6.3 1
lineage4.1.2.1.1 1
lineage1.1.1 2
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
lineage4.3.3 3
lineage1.1.1;lineage4 1
La3;M.canetti;lineage3.1 1
lineage5.1.4 1
La1.7;lineage4.9 2
lineage4.9;lineage7 1
lineage3.1.3 1
lineage1;lineage4.9 2
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4 1
La3;M.canetti;lineage4.9 1
M.canetti;lineage2.1;lineage4 1
lineage6.1.3 1
lineage4.6.3;lineage4.9 2
La2;lineage4.9 1
lineage4.1.1.3 1
M.canetti;lineage2.2 1
La1.2;La1.8.1 1
La1.7.1;La1.7.X-unk4 1
lineage4.3.4.1 2
lineage4.3.4.2 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La1.4 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
M.canetti;lineage2.1 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage2.2.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.3 1
M.canetti;lineage4.3.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 296
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR2041726 MDR-TB lineage4.1.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1791696 Other La1.8.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR4596902 MDR-TB lineage3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675387 Other lineage4.9 None
ERR971389 Sensitive lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR21677886 Sensitive lineage4.9 None
SRR1165423 RR-TB lineage4.1.2.1 None
SAMN02414850 Other lineage4.1.2.1 None
SRR21732954 Sensitive lineage4.9 None
ERR212125 HR-TB lineage4.9 None
ERR9787030 RR-TB lineage6.1.2 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR473334 HR-TB lineage4.9 None
ERR11465333 Sensitive lineage4.3.4.2.1 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR28351488 MDR-TB lineage2.2.1 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
SRR13861396 HR-TB lineage4.9 None
SRR6044815 Other lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736875 HR-TB lineage4.9 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
SRR11462861 Other La1.8.1 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR3275196 Other lineage2.2.1 nl
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR1063858 HR-TB lineage4.9 None
ERR2512770 Sensitive lineage4.2.1 None
SRR18289200 Other lineage4.9 None
SRR6045832 Other lineage4.9 None
ERR926157 Sensitive lineage4.9 None
SRR26399239 Sensitive lineage4.9 None
ERR1199132 Sensitive lineage4.6.1.1 None
ERR3797029 Other lineage4.9 None
ERR4818710 Sensitive lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
SRR6046611 Sensitive lineage4.9 None
SRR1165506 Other lineage4.1.2.1 None
ERR4811031 Sensitive lineage4.5 None
SRR3675507 Other lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR11252736 Other lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR4819357 Sensitive lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR8665994 Other lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797083 RR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR4817667 HR-TB lineage4.8 None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR18909918 Other lineage2.2.1.1 None
ERR2693228 RR-TB lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR926162 Sensitive lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
ERR4815550 Other lineage2.2;lineage4.9 None
ERR6359066 HR-TB lineage4.9 None
ERR4816964 Sensitive lineage4.9 None
ERR736856 Sensitive lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR181887 Other lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR13861153 Other lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR4769521 RR-TB lineage4.9 None
ERR4769433 RR-TB lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
ERR926158 Sensitive lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6046245 Other lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6046564 Sensitive lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR13423544 Other lineage4.5 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR926154 Sensitive lineage4.9 None
ERR4769493 Other lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR4819546 HR-TB lineage3 None
SRR7236330 Other La1.8.1 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
ERR4817554 Other lineage1.1.1 None
ERR473332 Other lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR11972367 Sensitive lineage2.2.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR5908228 RR-TB lineage4.3.3 None
ERR4813861 Other lineage4.3.3 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR4815815 Sensitive lineage4.9 None
SRR28868381 Other lineage4.9 None
ERR2513283 Sensitive lineage5.1.4 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR29126406 RR-TB lineage2.2.1 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1162864 Other lineage4.1.2.1 None
ERR4819462 Sensitive lineage4.9 None
ERR926156 Sensitive lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR18913742 Sensitive lineage3.1.3 None
ERR926165 Sensitive lineage4.9 None
SRR3675243 Other lineage4.9 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046141 Other lineage4.9 None
ERR6866807 Other lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR926155 Sensitive lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR4798823 HR-TB lineage4 None
ERR4819314 Other lineage1.1.1 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR13861510 Other lineage4.9 None
ERR176651 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR6045359 Sensitive lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR4818624 Other lineage4.3.4.2.1 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR9787336 RR-TB lineage6.1.3 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675522 Other lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR4821053 RR-TB lineage3 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR987765 Sensitive lineage4.6.1.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR5917972 MDR-TB lineage4.4.1.1 za
SRR3675269 RR-TB lineage4.9 None
ERR4799547 HR-TB lineage2.2.1 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR369161 Sensitive lineage4.9 None
ERR067712 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR4818561 Sensitive lineage4.9 None
ERR1063855 Other lineage4.9 None
ERR400345 Other lineage4.9 None
SRR29096879 Sensitive lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR7240033 Other La1.2;La1.8.1 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR5917710 Other lineage4.1.2.1 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR400326 Other lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR4814639 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR11465279 Sensitive lineage4.3.4.1 None
ERR400336 Sensitive lineage4.9 None
ERR11465235 Sensitive lineage4.3.4.2.1 None
ERR926163 Other lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926159 Sensitive lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11465232 Sensitive lineage4.1.2.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR926164 Other lineage4.9 None
SRR3675247 Other lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797086 Sensitive lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR9786346 Sensitive lineage4.3.4.2 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR16278274 Other La1.4 None
SRR12708416 Sensitive None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR2041725 MDR-TB lineage4.1.2.1 None
ERR6359082 Other lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
ERR9119096 RR-TB lineage4.3.3 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR13861553 Other lineage4.9 None
ERR6359070 Sensitive lineage4.9 None
SRR30049957 Other lineage4.1.2.1 None
ERR4818536 Other lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR181824 HR-TB lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR9786076 Sensitive lineage3 None
SRR7240492 HR-TB La1.7.1 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675477 Sensitive lineage4.9 None
SRR6046385 Sensitive lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4815310 Other lineage2.2.1;lineage4.9 None
ERR4815471 Sensitive lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR4816762 Sensitive lineage4.9 None
SRR29055611 Sensitive lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR9971114 Other lineage2.2.1 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11465597 Sensitive lineage4.1.2.1 None
SRR3675580 Sensitive lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR3675482 Other lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR23961529 Other lineage4.9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
SRR1167055 Other lineage4.1.2.1 None
ERR736848 Other lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675473 Sensitive lineage4.9 None
SRR3675514 Sensitive lineage4.9 None
ERR4799025 Other lineage4.8 None
SRR5341345 Sensitive lineage4.9 None
ERR926160 Sensitive lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR11662694 Other lineage4.9 None
ERR11465152 Sensitive lineage4.3.4.1 None
ERR4816548 HR-TB lineage4.5 None
ERR4769495 Other La1.3 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR6359069 Sensitive lineage4.9 None