EBG00000313325 - n.1438T>C
Drug resistance types
22 Sensitive
24 RR-TB
20 HR-TB
34 MDR-TB
17 Pre-XDR-TB
2 XDR-TB
70 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.1.2 | 4 |
| lineage4.3.4.2.1 | 3 |
| lineage1.2.1.2 | 2 |
| lineage4.9 | 30 |
| lineage4.3.4.1 | 6 |
| La1.8.1 | 7 |
| lineage2.2.2 | 3 |
| lineage4.8 | 14 |
| lineage4.8.1 | 2 |
| La1.7;lineage4.9 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage2.2.1 | 31 |
| lineage4.2.1 | 7 |
| lineage4.1.2.1 | 10 |
| lineage4.4.1.1 | 5 |
| lineage4.3.2 | 1 |
| lineage4.6.5 | 2 |
| lineage4.3.4.2 | 1 |
| La1.3 | 4 |
| lineage6.1.2 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage3.1.1 | 3 |
| lineage4.1.1.2 | 1 |
| lineage4.4.2 | 2 |
| lineage4.3.3 | 6 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.4 | 1 |
| lineage4.1.1.3 | 3 |
| lineage3 | 3 |
| lineage4.3;lineage4.9 | 1 |
| La3;lineage4.9 | 2 |
| lineage4.7 | 1 |
| lineage5.1.1 | 1 |
| lineage4.3.1.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage1.1.1.1 | 2 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.8.2 | 1 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage4.5 | 1 |
| La3;lineage4.3.4 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| La1.2 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 189 |
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | ERR323048 | Sensitive | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1792012 | Other | La1.8.1 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR1792022 | Other | La1.8.1 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR4769493 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR7070495 | Other | lineage4.1.2.1 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR3283046 | Sensitive | lineage4.9 | None | SRR7617847 | Other | La1.8.1 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR10796633 | Other | lineage4.3.4.2 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR3283043 | Other | lineage4.9 | None | ERR4769423 | Other | La1.3 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | SRR7645927 | Other | lineage4.8 | None | ERR8975044 | Other | lineage4.1.1.2 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR10796563 | Other | lineage4.3.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1792025 | Other | La1.8.1 | None | SRR21240161 | Sensitive | lineage4.1.2.1 | None | SRR1792024 | Other | La1.8.1 | None | SRR1184308 | RR-TB | lineage4.9 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283051 | Other | lineage4.9 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | ERR4820484 | Sensitive | lineage4.8 | None | ERR3283013 | Sensitive | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR14801720 | Other | lineage4.8 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR10796576 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR4816800 | Other | lineage4.8 | gb | SRR6982246 | RR-TB | lineage4.1.2;lineage4.9 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645974 | Other | lineage4.3.4.1 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR1238559 | Other | lineage4.9 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR6045002 | RR-TB | lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR4769514 | Other | La1.3 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR1750885 | Sensitive | lineage2.2.1 | zw | SRR7645928 | Other | lineage4.7 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4796351 | Sensitive | lineage4.9 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR1750889 | Other | lineage4.4.1.1 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR12420628 | MDR-TB | lineage2.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4769436 | Other | La1.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR4811101 | Other | lineage4.4.2 | None | DRR185000 | Other | lineage1.1.1.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR16156775 | Other | lineage4.9 | None | SRR9971046 | MDR-TB | lineage4.8 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR3283008 | Other | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR4819910 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR3283033 | Sensitive | lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR1140724 | Other | lineage2.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | SRR7645973 | Other | lineage4.3.4.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR867574 | Other | lineage4.9 | None | SRR5163959 | Other | lineage4.9 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR7755652 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR5087846 | Other | La1.8.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4822150 | Other | lineage4.8 | gb | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175474 | Other | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR4830888 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | ERR6397174 | MDR-TB | lineage4.1.2.1 | None | ERR4769418 | Other | La1.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | ERR4821276 | Sensitive | lineage3 | None | ERR6397203 | MDR-TB | lineage4.1.2.1 | None |
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