TB-Profiler result

Run: ERR4819910
Summary

Run ID: ERR4819910

Sample name:

Date: 01-04-2023 16:22:21

Number of reads: 68364

Percentage reads mapped: 7.42

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrA 7572 p.Ser91Ala missense_variant 1.0 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6745 c.-557T>C upstream_gene_variant 0.67
gyrA 6793 c.-509T>C upstream_gene_variant 0.5
gyrB 6798 p.Gly520Ala missense_variant 0.5
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7571 c.270G>C synonymous_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7596 p.Met99Leu missense_variant 0.67
gyrA 7601 c.300C>G synonymous_variant 1.0
gyrA 7628 c.327G>C synonymous_variant 0.67
gyrA 7631 c.330G>C synonymous_variant 0.67
gyrA 7638 p.Gln113Asn missense_variant 0.67
gyrA 8294 c.993T>C synonymous_variant 0.5
gyrA 8306 c.1005C>G synonymous_variant 0.5
gyrA 8316 p.Thr339Tyr missense_variant 0.5
gyrA 8319 p.Ser340Gly missense_variant 0.67
gyrA 8324 c.1023T>C synonymous_variant 0.67
gyrA 8329 p.Ala343Val missense_variant 0.67
gyrA 8339 c.1038A>G synonymous_variant 0.67
gyrA 8340 p.Ala347Ser missense_variant 0.67
gyrA 8366 c.1065G>C synonymous_variant 0.67
gyrA 9453 p.Arg718Gly missense_variant 1.0
fgd1 491726 p.His315Arg missense_variant 0.5
mshA 575770 c.423G>T synonymous_variant 0.5
rpoB 760883 c.1077G>C synonymous_variant 1.0
rpoB 760886 c.1080A>G synonymous_variant 1.0
rpoB 760919 c.1113C>G synonymous_variant 1.0
rpoB 760928 c.1122G>C synonymous_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 1.0
rpoB 761003 c.1197C>G synonymous_variant 1.0
rpoB 761015 c.1209G>C synonymous_variant 0.67
rpoB 761027 c.1221A>G synonymous_variant 0.67
rpoB 761036 c.1230G>C synonymous_variant 0.67
rpoB 761037 c.1231T>C synonymous_variant 0.67
rpoB 761057 c.1251G>C synonymous_variant 0.5
rpoB 761516 c.1710G>C synonymous_variant 1.0
rpoB 761537 c.1731C>G synonymous_variant 1.0
rpoB 761549 c.1743G>A synonymous_variant 1.0
rpoB 761555 c.1749G>C synonymous_variant 1.0
rpoB 761558 c.1752C>G synonymous_variant 1.0
rpoB 761561 c.1755C>G synonymous_variant 1.0
rpoB 761570 c.1764T>C synonymous_variant 1.0
rpoB 761573 c.1767C>G synonymous_variant 1.0
rpoB 761579 c.1773G>C synonymous_variant 1.0
rpoC 762896 c.-474G>C upstream_gene_variant 1.0
rpoC 762920 c.-450C>G upstream_gene_variant 0.5
rpoC 762923 c.-447C>G upstream_gene_variant 0.5
rpoC 762929 c.-441G>T upstream_gene_variant 0.6
rpoC 762938 c.-432G>C upstream_gene_variant 0.25
rpoC 762959 c.-411G>C upstream_gene_variant 0.4
rpoC 762962 c.-408C>T upstream_gene_variant 0.27
rpoC 762971 c.-399G>C upstream_gene_variant 0.45
rpoC 762980 c.-390T>C upstream_gene_variant 0.2
rpoC 762989 c.-381G>C upstream_gene_variant 0.4
rpoC 762995 c.-375G>C upstream_gene_variant 0.22
rpoB 763005 p.Cys1067Val missense_variant 0.4
rpoC 763031 c.-339T>C upstream_gene_variant 0.4
rpoC 763088 c.-282C>G upstream_gene_variant 0.6
rpoC 763094 c.-276G>C upstream_gene_variant 0.6
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoC 763528 c.159G>T synonymous_variant 1.0
rpoC 763531 c.162G>C synonymous_variant 0.75
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763537 c.168C>G synonymous_variant 0.83
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 0.43
rpoC 763573 c.204G>C synonymous_variant 0.57
rpoC 763585 c.216C>G synonymous_variant 0.27
rpoC 763615 c.246G>C synonymous_variant 0.23
rpoC 763621 c.252C>G synonymous_variant 0.15
rpoC 763622 p.Ala85Ser missense_variant 0.54
rpoC 763630 c.261G>C synonymous_variant 0.46
rpoC 763633 c.264T>C synonymous_variant 0.55
rpoC 763636 c.267T>C synonymous_variant 0.2
rpoC 763648 c.279C>G synonymous_variant 0.33
rpoC 763660 c.291T>G synonymous_variant 1.0
rpoC 763666 c.297G>C synonymous_variant 0.67
rpoC 763669 c.300C>G synonymous_variant 0.86
rpoC 763675 c.306C>G synonymous_variant 0.33
rpoC 764308 c.939G>C synonymous_variant 0.4
rpoC 764315 p.Ala316Cys missense_variant 0.4
rpoC 764326 c.957G>C synonymous_variant 0.29
rpoC 764335 c.966G>C synonymous_variant 0.29
rpoC 764338 p.Glu323Asp missense_variant 0.57
rpoC 764365 c.996C>T synonymous_variant 0.57
rpoC 764371 c.1002G>C synonymous_variant 0.43
rpoC 764377 c.1008C>G synonymous_variant 0.5
rpoC 764380 c.1011G>C synonymous_variant 0.5
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.83
rpoC 764398 c.1029G>C synonymous_variant 0.67
rpoC 764405 c.1036A>C synonymous_variant 0.75
rpoC 764410 c.1041G>C synonymous_variant 0.67
rpoC 764446 c.1077T>C synonymous_variant 0.5
rpoC 764455 c.1086G>T synonymous_variant 0.5
rpoC 764458 c.1089G>C synonymous_variant 0.5
rpoC 764461 c.1092A>G synonymous_variant 0.5
rpoC 764497 c.1128A>G synonymous_variant 0.4
rpoC 764498 p.Ser377Ala missense_variant 0.4
rpoC 764503 c.1134G>C synonymous_variant 0.4
rpoC 764521 c.1152T>C synonymous_variant 0.33
rpoC 764527 c.1158C>T synonymous_variant 0.33
rpoC 764536 c.1167G>T synonymous_variant 0.4
rpoC 764551 c.1182G>T synonymous_variant 0.5
rpoC 764611 c.1242G>T synonymous_variant 0.5
rpoC 764623 c.1254C>G synonymous_variant 0.4
rpoC 764632 c.1263T>C synonymous_variant 0.83
rpoC 764635 c.1266C>G synonymous_variant 0.33
rpoC 764644 c.1275G>C synonymous_variant 0.8
rpoC 764650 c.1281G>T synonymous_variant 0.75
rpoC 764681 c.1312C>T synonymous_variant 0.22
rpoC 764695 c.1326T>C synonymous_variant 0.71
rpoC 764705 p.Leu446Ala missense_variant 0.5
rpoC 764747 c.1378C>T synonymous_variant 0.33
rpoC 764751 p.Val461Asp missense_variant 0.6
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 764803 c.1434C>T synonymous_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpoC 767158 c.3789T>C synonymous_variant 1.0
rpoC 767167 c.3798C>G synonymous_variant 1.0
rpoC 767180 p.Ala1271Pro missense_variant 1.0
rpsL 781754 c.195G>C synonymous_variant 0.5
rpsL 781760 c.201T>C synonymous_variant 0.5
rpsL 781794 p.Met79Leu missense_variant 0.18
rpsL 781802 c.243G>C synonymous_variant 0.67
rpsL 781805 c.246G>C synonymous_variant 0.42
rpsL 781814 c.255C>T synonymous_variant 0.17
rpsL 781817 c.258G>C synonymous_variant 0.27
rpsL 781829 c.270G>C synonymous_variant 0.22
rpsL 781832 c.273T>C synonymous_variant 0.62
rpsL 781835 c.276T>C synonymous_variant 0.2
rpsL 781838 c.279G>C synonymous_variant 0.67
rpsL 781859 c.300T>C synonymous_variant 0.43
rpsL 781865 c.306G>C synonymous_variant 0.57
rpsL 781868 c.309T>C synonymous_variant 0.75
rpsL 781871 c.312G>C synonymous_variant 0.75
rpsL 781877 c.318T>C synonymous_variant 0.44
rpsL 781880 c.321C>G synonymous_variant 0.38
rpsL 781892 c.333A>G synonymous_variant 0.33
rplC 800693 c.-116A>C upstream_gene_variant 0.33
rplC 800720 c.-89T>C upstream_gene_variant 0.33
rplC 800726 c.-83G>C upstream_gene_variant 0.33
Rv1258c 1406513 c.828G>A synonymous_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.4
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.21
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.4
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.67
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.4
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.35
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.56
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.37
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.45
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.6
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.9
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.76
rrs 1472214 n.369C>G non_coding_transcript_exon_variant 0.5
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.36
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.88
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.33
rrs 1472235 n.390G>C non_coding_transcript_exon_variant 0.58
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.64
rrs 1472242 n.397C>T non_coding_transcript_exon_variant 0.25
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.8
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.2
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>A non_coding_transcript_exon_variant 1.0
rrs 1472508 n.663T>C non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.75
rrs 1472571 n.726G>T non_coding_transcript_exon_variant 0.73
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.36
rrs 1472582 n.737G>T non_coding_transcript_exon_variant 0.5
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.17
rrs 1472585 n.740A>C non_coding_transcript_exon_variant 0.5
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.17
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.17
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.17
rrs 1472606 n.761C>T non_coding_transcript_exon_variant 0.23
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.15
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.15
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.15
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.31
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.21
rrs 1472645 n.800G>A non_coding_transcript_exon_variant 0.57
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.6
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.6
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.5
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.67
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.67
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.67
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.67
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.67
rrs 1472707 n.862A>G non_coding_transcript_exon_variant 0.29
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.38
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.43
rrs 1472715 n.870C>T non_coding_transcript_exon_variant 0.25
rrs 1472726 n.881G>A non_coding_transcript_exon_variant 0.15
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.21
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.19
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.31
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.22
rrs 1472754 n.909G>T non_coding_transcript_exon_variant 0.17
rrs 1472767 n.922G>C non_coding_transcript_exon_variant 0.16
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.43
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.24
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.45
rrs 1472812 n.967A>C non_coding_transcript_exon_variant 0.14
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 1.0
rrs 1472841 n.996G>A non_coding_transcript_exon_variant 1.0
rrs 1472847 n.1002G>T non_coding_transcript_exon_variant 0.4
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.5
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.33
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.33
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.33
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 0.5
rrs 1472861 n.1016G>A non_coding_transcript_exon_variant 0.33
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.43
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.43
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.43
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.86
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.86
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.57
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.33
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.5
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.4
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.22
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.62
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.19
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.85
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.78
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.33
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.48
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.33
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.85
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.85
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.9
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.81
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.85
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.71
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.17
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.33
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.38
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.22
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.22
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.89
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.4
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.75
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.8
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.67
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.67
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.62
rrs 1473353 n.1508C>T non_coding_transcript_exon_variant 0.4
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.75
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.75
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.75
rrl 1473782 n.125A>G non_coding_transcript_exon_variant 0.67
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.67
rrl 1473792 n.135C>G non_coding_transcript_exon_variant 0.67
rrl 1473797 n.140G>C non_coding_transcript_exon_variant 0.67
rrl 1473803 n.146G>C non_coding_transcript_exon_variant 0.67
rrl 1473828 n.173_174delTG non_coding_transcript_exon_variant 0.67
rrl 1473834 n.178_179insTAG non_coding_transcript_exon_variant 0.67
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.75
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.75
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.75
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 1.0
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 1.0
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 1.0
rrl 1473917 n.260G>T non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 1.0
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 1.0
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 1.0
rrl 1474220 n.563G>A non_coding_transcript_exon_variant 0.67
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 1.0
rrl 1474483 n.826C>G non_coding_transcript_exon_variant 0.67
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.75
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.5
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.67
rrl 1474507 n.850G>A non_coding_transcript_exon_variant 0.5
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.83
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.6
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.8
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 0.5
rrl 1474601 n.944C>T non_coding_transcript_exon_variant 0.33
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.5
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.5
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 1.0
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 0.75
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.67
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 1.0
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 0.75
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.75
rrl 1474717 n.1060_1061insGCCAG non_coding_transcript_exon_variant 0.71
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.2
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.8
rrl 1474740 n.1083G>C non_coding_transcript_exon_variant 0.2
rrl 1474747 n.1090C>G non_coding_transcript_exon_variant 0.22
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.33
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>A non_coding_transcript_exon_variant 0.6
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.5
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.33
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.33
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.33
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.33
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.67
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.5
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474920 n.1263G>A non_coding_transcript_exon_variant 1.0
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475458 n.1801C>T non_coding_transcript_exon_variant 1.0
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 1.0
rrl 1475467 n.1810G>A non_coding_transcript_exon_variant 1.0
rrl 1475480 n.1824_1828delCACAC non_coding_transcript_exon_variant 1.0
rrl 1475488 n.1831_1832insAGCC non_coding_transcript_exon_variant 0.6
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.83
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.5
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.5
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.5
rrl 1475544 n.1887A>C non_coding_transcript_exon_variant 0.4
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.4
rrl 1475740 n.2083G>C non_coding_transcript_exon_variant 0.33
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.5
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.6
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.67
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.8
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.4
rrl 1475788 n.2131C>G non_coding_transcript_exon_variant 0.6
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.71
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.56
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.22
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.67
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.22
rrl 1475982 n.2325G>A non_coding_transcript_exon_variant 0.38
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.71
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.4
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.4
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.6
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.67
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.67
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.67
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.29
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.57
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.67
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.6
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.6
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.5
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.67
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.5
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 1.0
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>G non_coding_transcript_exon_variant 1.0
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.45
rrl 1476363 n.2706A>G non_coding_transcript_exon_variant 0.25
rrl 1476366 n.2709A>C non_coding_transcript_exon_variant 0.25
rrl 1476374 n.2717T>G non_coding_transcript_exon_variant 0.23
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.46
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.21
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.16
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.17
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.84
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.35
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.5
rrl 1476501 n.2844C>A non_coding_transcript_exon_variant 0.29
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.33
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.83
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.5
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.43
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.43
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.5
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.71
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.57
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.6
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.6
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.75
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.75
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.6
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.8
rrl 1476621 n.2964C>T non_coding_transcript_exon_variant 0.4
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.5
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.75
rpsA 1833781 c.240T>C synonymous_variant 1.0
rpsA 1833794 p.Glu85Gln missense_variant 1.0
rpsA 1833797 p.Val86Ile missense_variant 1.0
rpsA 1833802 c.261A>G synonymous_variant 1.0
rpsA 1833811 c.270G>C synonymous_variant 1.0
rpsA 1833815 p.Thr92Gln missense_variant 1.0
rpsA 1833829 c.288A>G synonymous_variant 1.0
rpsA 1833841 c.300C>G synonymous_variant 1.0
rpsA 1833847 c.306C>G synonymous_variant 0.67
rpsA 1833856 c.315A>G synonymous_variant 1.0
rpsA 1833874 c.333T>C synonymous_variant 1.0
rpsA 1833886 c.345C>G synonymous_variant 0.75
rpsA 1833894 p.Ala118Asp missense_variant 0.67
rpsA 1833905 p.Lys122Ala missense_variant 0.5
rpsA 1833914 p.Ala125Pro missense_variant 0.83
rpsA 1833920 p.Lys127Glu missense_variant 1.0
rpsA 1833928 c.387G>C synonymous_variant 0.6
rpsA 1833949 c.408T>C synonymous_variant 1.0
rpsA 1833970 c.429G>C synonymous_variant 1.0
rpsA 1833973 c.432G>C synonymous_variant 0.75
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833985 c.444G>C synonymous_variant 0.67
rpsA 1834034 p.Ile165Val missense_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 0.67
rpsA 1834240 c.699T>C synonymous_variant 0.71
rpsA 1834249 c.708T>C synonymous_variant 0.86
rpsA 1834255 c.714C>G synonymous_variant 0.3
rpsA 1834261 c.720A>G synonymous_variant 0.78
rpsA 1834264 c.723G>C synonymous_variant 0.55
rpsA 1834285 c.744G>C synonymous_variant 0.38
rpsA 1834286 c.745_746delTCinsAG synonymous_variant 0.3
rpsA 1834294 c.753G>C synonymous_variant 0.8
rpsA 1834298 p.Gln253Ala missense_variant 0.7
rpsA 1834303 c.762T>C synonymous_variant 0.62
rpsA 1834306 c.765T>C synonymous_variant 0.64
rpsA 1834307 p.Asp256Gln missense_variant 0.36
rpsA 1834318 c.777C>G synonymous_variant 0.2
rpsA 1834327 c.786G>C synonymous_variant 0.3
rpsA 1834330 c.789C>G synonymous_variant 0.2
rpsA 1834348 c.807T>C synonymous_variant 0.56
rpsA 1834357 c.816T>C synonymous_variant 0.33
rpsA 1834451 c.910T>C synonymous_variant 0.8
rpsA 1834456 c.915T>G synonymous_variant 0.75
rpsA 1834459 c.918G>C synonymous_variant 0.75
rpsA 1834465 c.924T>C synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834474 c.933C>G synonymous_variant 1.0
rpsA 1834477 c.936C>G synonymous_variant 0.75
rpsA 1834489 c.948T>C synonymous_variant 1.0
rpsA 1834498 c.957C>T synonymous_variant 0.25
rpsA 1834504 c.963G>C synonymous_variant 0.38
rpsA 1834508 p.Ile323Val missense_variant 0.25
rpsA 1834520 p.Ala327Ser missense_variant 0.4
rpsA 1834528 c.987T>C synonymous_variant 1.0
rpsA 1834534 c.993C>G synonymous_variant 0.6
rpsA 1834538 p.Val333Ile missense_variant 0.5
rpsA 1834543 c.1002C>G synonymous_variant 1.0
rpsA 1834546 p.Asp335Glu missense_variant 1.0
rpsA 1834552 c.1011G>C synonymous_variant 0.5
rpsA 1834558 c.1017C>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518070 c.-45C>A upstream_gene_variant 1.0
ald 3087241 p.Ala141Val missense_variant 0.67
fbiD 3339556 p.Gly147Ser missense_variant 0.67
fprA 3473970 c.-37C>A upstream_gene_variant 1.0
clpC1 4038860 c.1845G>C synonymous_variant 0.4
clpC1 4038875 c.1830C>G synonymous_variant 0.4
clpC1 4038878 c.1827A>G synonymous_variant 0.6
clpC1 4038905 c.1800A>C synonymous_variant 0.75
clpC1 4038914 p.Ala597Ser missense_variant 0.5
clpC1 4038923 c.1782A>G synonymous_variant 0.67
clpC1 4038929 c.1776G>C synonymous_variant 0.67
clpC1 4039553 p.Thr384Gln missense_variant 0.67
clpC1 4039570 p.Met379Leu missense_variant 1.0
clpC1 4039575 p.Ala377Gln missense_variant 0.67
clpC1 4039577 c.1128T>C synonymous_variant 1.0
clpC1 4039586 p.Ser373Thr missense_variant 0.67
clpC1 4039589 c.1116G>C synonymous_variant 1.0
clpC1 4039610 c.1095G>C synonymous_variant 0.5
clpC1 4039616 c.1089G>C synonymous_variant 1.0
clpC1 4039649 c.1056G>C synonymous_variant 0.67
clpC1 4039661 c.1044T>C synonymous_variant 0.75
clpC1 4039664 c.1041G>C synonymous_variant 0.5
clpC1 4039670 p.Val345Ile missense_variant 0.5
clpC1 4039697 c.1008C>G synonymous_variant 0.67
clpC1 4039729 p.Asp326Asn missense_variant 0.67
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039856 p.Ile283Met missense_variant 1.0
clpC1 4039865 c.840T>C synonymous_variant 1.0
clpC1 4039875 p.Asn277Arg missense_variant 0.5
clpC1 4039898 c.807C>G synonymous_variant 0.29
clpC1 4039904 c.801A>G synonymous_variant 0.5
clpC1 4039919 c.786C>A synonymous_variant 0.25
clpC1 4039931 c.774T>C synonymous_variant 0.5
clpC1 4039942 c.763C>T synonymous_variant 0.33
clpC1 4039946 c.759A>T synonymous_variant 0.4
clpC1 4039952 c.753T>C synonymous_variant 0.5
clpC1 4039955 c.750G>T synonymous_variant 0.4
clpC1 4039964 c.741C>G synonymous_variant 0.33
clpC1 4039979 c.726C>G synonymous_variant 0.4
clpC1 4039982 c.723G>A synonymous_variant 0.4
clpC1 4039991 c.714G>C synonymous_variant 0.4
aftB 4267175 c.1632_1661delGAAGTGGTACCCGGGTATTCCCGGCTACAT disruptive_inframe_deletion 0.5
whiB6 4338595 c.-75delG upstream_gene_variant 1.0