Run ID: ERR4819910
Sample name:
Date: 01-04-2023 16:22:21
Number of reads: 68364
Percentage reads mapped: 7.42
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7572 | p.Ser91Ala | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6745 | c.-557T>C | upstream_gene_variant | 0.67 |
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 0.5 |
gyrB | 6798 | p.Gly520Ala | missense_variant | 0.5 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7571 | c.270G>C | synonymous_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7596 | p.Met99Leu | missense_variant | 0.67 |
gyrA | 7601 | c.300C>G | synonymous_variant | 1.0 |
gyrA | 7628 | c.327G>C | synonymous_variant | 0.67 |
gyrA | 7631 | c.330G>C | synonymous_variant | 0.67 |
gyrA | 7638 | p.Gln113Asn | missense_variant | 0.67 |
gyrA | 8294 | c.993T>C | synonymous_variant | 0.5 |
gyrA | 8306 | c.1005C>G | synonymous_variant | 0.5 |
gyrA | 8316 | p.Thr339Tyr | missense_variant | 0.5 |
gyrA | 8319 | p.Ser340Gly | missense_variant | 0.67 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.67 |
gyrA | 8329 | p.Ala343Val | missense_variant | 0.67 |
gyrA | 8339 | c.1038A>G | synonymous_variant | 0.67 |
gyrA | 8340 | p.Ala347Ser | missense_variant | 0.67 |
gyrA | 8366 | c.1065G>C | synonymous_variant | 0.67 |
gyrA | 9453 | p.Arg718Gly | missense_variant | 1.0 |
fgd1 | 491726 | p.His315Arg | missense_variant | 0.5 |
mshA | 575770 | c.423G>T | synonymous_variant | 0.5 |
rpoB | 760883 | c.1077G>C | synonymous_variant | 1.0 |
rpoB | 760886 | c.1080A>G | synonymous_variant | 1.0 |
rpoB | 760919 | c.1113C>G | synonymous_variant | 1.0 |
rpoB | 760928 | c.1122G>C | synonymous_variant | 1.0 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 1.0 |
rpoB | 761003 | c.1197C>G | synonymous_variant | 1.0 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.67 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.67 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.67 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.67 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.5 |
rpoB | 761516 | c.1710G>C | synonymous_variant | 1.0 |
rpoB | 761537 | c.1731C>G | synonymous_variant | 1.0 |
rpoB | 761549 | c.1743G>A | synonymous_variant | 1.0 |
rpoB | 761555 | c.1749G>C | synonymous_variant | 1.0 |
rpoB | 761558 | c.1752C>G | synonymous_variant | 1.0 |
rpoB | 761561 | c.1755C>G | synonymous_variant | 1.0 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 1.0 |
rpoB | 761573 | c.1767C>G | synonymous_variant | 1.0 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 1.0 |
rpoC | 762896 | c.-474G>C | upstream_gene_variant | 1.0 |
rpoC | 762920 | c.-450C>G | upstream_gene_variant | 0.5 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.5 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.6 |
rpoC | 762938 | c.-432G>C | upstream_gene_variant | 0.25 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 0.4 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.27 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.45 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.2 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.4 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.22 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 0.4 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.4 |
rpoC | 763088 | c.-282C>G | upstream_gene_variant | 0.6 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.6 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 1.0 |
rpoC | 763528 | c.159G>T | synonymous_variant | 1.0 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.75 |
rpoC | 763534 | c.165T>C | synonymous_variant | 1.0 |
rpoC | 763537 | c.168C>G | synonymous_variant | 0.83 |
rpoC | 763546 | c.177A>G | synonymous_variant | 1.0 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.43 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.57 |
rpoC | 763585 | c.216C>G | synonymous_variant | 0.27 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.23 |
rpoC | 763621 | c.252C>G | synonymous_variant | 0.15 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.54 |
rpoC | 763630 | c.261G>C | synonymous_variant | 0.46 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.55 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.2 |
rpoC | 763648 | c.279C>G | synonymous_variant | 0.33 |
rpoC | 763660 | c.291T>G | synonymous_variant | 1.0 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.67 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.86 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.33 |
rpoC | 764308 | c.939G>C | synonymous_variant | 0.4 |
rpoC | 764315 | p.Ala316Cys | missense_variant | 0.4 |
rpoC | 764326 | c.957G>C | synonymous_variant | 0.29 |
rpoC | 764335 | c.966G>C | synonymous_variant | 0.29 |
rpoC | 764338 | p.Glu323Asp | missense_variant | 0.57 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.57 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.43 |
rpoC | 764377 | c.1008C>G | synonymous_variant | 0.5 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.5 |
rpoC | 764387 | c.1018_1020delTTGinsCTC | synonymous_variant | 0.83 |
rpoC | 764398 | c.1029G>C | synonymous_variant | 0.67 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.75 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 0.67 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.5 |
rpoC | 764455 | c.1086G>T | synonymous_variant | 0.5 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.5 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.5 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.4 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.4 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.4 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.33 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.33 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.4 |
rpoC | 764551 | c.1182G>T | synonymous_variant | 0.5 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.5 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 0.4 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.83 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.33 |
rpoC | 764644 | c.1275G>C | synonymous_variant | 0.8 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.75 |
rpoC | 764681 | c.1312C>T | synonymous_variant | 0.22 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.71 |
rpoC | 764705 | p.Leu446Ala | missense_variant | 0.5 |
rpoC | 764747 | c.1378C>T | synonymous_variant | 0.33 |
rpoC | 764751 | p.Val461Asp | missense_variant | 0.6 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 1.0 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 1.0 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 1.0 |
rpoC | 767158 | c.3789T>C | synonymous_variant | 1.0 |
rpoC | 767167 | c.3798C>G | synonymous_variant | 1.0 |
rpoC | 767180 | p.Ala1271Pro | missense_variant | 1.0 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.5 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.5 |
rpsL | 781794 | p.Met79Leu | missense_variant | 0.18 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.67 |
rpsL | 781805 | c.246G>C | synonymous_variant | 0.42 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.17 |
rpsL | 781817 | c.258G>C | synonymous_variant | 0.27 |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.22 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.62 |
rpsL | 781835 | c.276T>C | synonymous_variant | 0.2 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.67 |
rpsL | 781859 | c.300T>C | synonymous_variant | 0.43 |
rpsL | 781865 | c.306G>C | synonymous_variant | 0.57 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.75 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.75 |
rpsL | 781877 | c.318T>C | synonymous_variant | 0.44 |
rpsL | 781880 | c.321C>G | synonymous_variant | 0.38 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.33 |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.33 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.33 |
rplC | 800726 | c.-83G>C | upstream_gene_variant | 0.33 |
Rv1258c | 1406513 | c.828G>A | synonymous_variant | 1.0 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472507 | n.662C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472508 | n.663T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472571 | n.726G>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472582 | n.737G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472585 | n.740A>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472606 | n.761C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472645 | n.800G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472686 | n.841G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472707 | n.862A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472715 | n.870C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472726 | n.881G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472767 | n.922G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472840 | n.995A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472841 | n.996G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472847 | n.1002G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472848 | n.1003T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472849 | n.1004C>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472859 | n.1014G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472860 | n.1015C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472861 | n.1016G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472873 | n.1028C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472874 | n.1029C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472875 | n.1030T>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473099 | n.1254T>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473100 | n.1255G>C | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1473109 | n.1264T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473262 | n.1417T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473353 | n.1508C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473756 | n.99G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473757 | n.100T>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473782 | n.125A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473788 | n.131A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473792 | n.135C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473797 | n.140G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473803 | n.146G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473828 | n.173_174delTG | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473834 | n.178_179insTAG | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473844 | n.187C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473870 | n.213G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473871 | n.214T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473917 | n.260G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473923 | n.266C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474202 | n.545T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474220 | n.563G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474483 | n.826C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474507 | n.850G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474551 | n.894G>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474627 | n.970G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474660 | n.1003G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474676 | n.1019T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474690 | n.1033C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474709 | n.1053_1056delTGGT | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474717 | n.1060_1061insGCCAG | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474722 | n.1065T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474740 | n.1083G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474747 | n.1090C>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474777 | n.1120T>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474802 | n.1145T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474920 | n.1263G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475113 | n.1456C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475452 | n.1795C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475458 | n.1801C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475460 | n.1803A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475467 | n.1810G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475480 | n.1824_1828delCACAC | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475488 | n.1831_1832insAGCC | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475508 | n.1851A>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475538 | n.1881T>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475539 | n.1882A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475544 | n.1887A>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475740 | n.2083G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475758 | n.2101A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475759 | n.2102C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475788 | n.2131C>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475982 | n.2325G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475991 | n.2334T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476251 | n.2594T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476255 | n.2598A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476256 | n.2599A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476301 | n.2644A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476363 | n.2706A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476366 | n.2709A>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476374 | n.2717T>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476501 | n.2844C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476621 | n.2964C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 0.75 |
rpsA | 1833781 | c.240T>C | synonymous_variant | 1.0 |
rpsA | 1833794 | p.Glu85Gln | missense_variant | 1.0 |
rpsA | 1833797 | p.Val86Ile | missense_variant | 1.0 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 1.0 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 1.0 |
rpsA | 1833815 | p.Thr92Gln | missense_variant | 1.0 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 1.0 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 1.0 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.67 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 1.0 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 1.0 |
rpsA | 1833886 | c.345C>G | synonymous_variant | 0.75 |
rpsA | 1833894 | p.Ala118Asp | missense_variant | 0.67 |
rpsA | 1833905 | p.Lys122Ala | missense_variant | 0.5 |
rpsA | 1833914 | p.Ala125Pro | missense_variant | 0.83 |
rpsA | 1833920 | p.Lys127Glu | missense_variant | 1.0 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.6 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 1.0 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 1.0 |
rpsA | 1833973 | c.432G>C | synonymous_variant | 0.75 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 1.0 |
rpsA | 1833985 | c.444G>C | synonymous_variant | 0.67 |
rpsA | 1834034 | p.Ile165Val | missense_variant | 1.0 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.67 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.71 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.86 |
rpsA | 1834255 | c.714C>G | synonymous_variant | 0.3 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.78 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.55 |
rpsA | 1834285 | c.744G>C | synonymous_variant | 0.38 |
rpsA | 1834286 | c.745_746delTCinsAG | synonymous_variant | 0.3 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.8 |
rpsA | 1834298 | p.Gln253Ala | missense_variant | 0.7 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.62 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.64 |
rpsA | 1834307 | p.Asp256Gln | missense_variant | 0.36 |
rpsA | 1834318 | c.777C>G | synonymous_variant | 0.2 |
rpsA | 1834327 | c.786G>C | synonymous_variant | 0.3 |
rpsA | 1834330 | c.789C>G | synonymous_variant | 0.2 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.56 |
rpsA | 1834357 | c.816T>C | synonymous_variant | 0.33 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.8 |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.75 |
rpsA | 1834459 | c.918G>C | synonymous_variant | 0.75 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 1.0 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 1.0 |
rpsA | 1834474 | c.933C>G | synonymous_variant | 1.0 |
rpsA | 1834477 | c.936C>G | synonymous_variant | 0.75 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 1.0 |
rpsA | 1834498 | c.957C>T | synonymous_variant | 0.25 |
rpsA | 1834504 | c.963G>C | synonymous_variant | 0.38 |
rpsA | 1834508 | p.Ile323Val | missense_variant | 0.25 |
rpsA | 1834520 | p.Ala327Ser | missense_variant | 0.4 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 1.0 |
rpsA | 1834534 | c.993C>G | synonymous_variant | 0.6 |
rpsA | 1834538 | p.Val333Ile | missense_variant | 0.5 |
rpsA | 1834543 | c.1002C>G | synonymous_variant | 1.0 |
rpsA | 1834546 | p.Asp335Glu | missense_variant | 1.0 |
rpsA | 1834552 | c.1011G>C | synonymous_variant | 0.5 |
rpsA | 1834558 | c.1017C>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518070 | c.-45C>A | upstream_gene_variant | 1.0 |
ald | 3087241 | p.Ala141Val | missense_variant | 0.67 |
fbiD | 3339556 | p.Gly147Ser | missense_variant | 0.67 |
fprA | 3473970 | c.-37C>A | upstream_gene_variant | 1.0 |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.4 |
clpC1 | 4038875 | c.1830C>G | synonymous_variant | 0.4 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.6 |
clpC1 | 4038905 | c.1800A>C | synonymous_variant | 0.75 |
clpC1 | 4038914 | p.Ala597Ser | missense_variant | 0.5 |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 0.67 |
clpC1 | 4038929 | c.1776G>C | synonymous_variant | 0.67 |
clpC1 | 4039553 | p.Thr384Gln | missense_variant | 0.67 |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 1.0 |
clpC1 | 4039575 | p.Ala377Gln | missense_variant | 0.67 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 1.0 |
clpC1 | 4039586 | p.Ser373Thr | missense_variant | 0.67 |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 1.0 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.5 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 1.0 |
clpC1 | 4039649 | c.1056G>C | synonymous_variant | 0.67 |
clpC1 | 4039661 | c.1044T>C | synonymous_variant | 0.75 |
clpC1 | 4039664 | c.1041G>C | synonymous_variant | 0.5 |
clpC1 | 4039670 | p.Val345Ile | missense_variant | 0.5 |
clpC1 | 4039697 | c.1008C>G | synonymous_variant | 0.67 |
clpC1 | 4039729 | p.Asp326Asn | missense_variant | 0.67 |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 1.0 |
clpC1 | 4039856 | p.Ile283Met | missense_variant | 1.0 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 1.0 |
clpC1 | 4039875 | p.Asn277Arg | missense_variant | 0.5 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.29 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.5 |
clpC1 | 4039919 | c.786C>A | synonymous_variant | 0.25 |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.5 |
clpC1 | 4039942 | c.763C>T | synonymous_variant | 0.33 |
clpC1 | 4039946 | c.759A>T | synonymous_variant | 0.4 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.5 |
clpC1 | 4039955 | c.750G>T | synonymous_variant | 0.4 |
clpC1 | 4039964 | c.741C>G | synonymous_variant | 0.33 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.4 |
clpC1 | 4039982 | c.723G>A | synonymous_variant | 0.4 |
clpC1 | 4039991 | c.714G>C | synonymous_variant | 0.4 |
aftB | 4267175 | c.1632_1661delGAAGTGGTACCCGGGTATTCCCGGCTACAT | disruptive_inframe_deletion | 0.5 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |