EBG00000313339 - n.2522C>T
Drug resistance types
21 Sensitive
20 RR-TB
13 HR-TB
27 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
117 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.1.1 | 1 |
| lineage4.9 | 43 |
| lineage4.7 | 1 |
| lineage4.2.1 | 2 |
| lineage3 | 10 |
| lineage2.2.2 | 4 |
| lineage4.1.1.1 | 5 |
| lineage4.3.3 | 9 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.8 | 20 |
| lineage2.2.1 | 36 |
| lineage4.1.1.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.6.1.2 | 4 |
| lineage4.4.1.1.1 | 2 |
| lineage4.4.1.1 | 7 |
| lineage1.2.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.1.2 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.1.1.3 | 4 |
| lineage3;lineage4 | 1 |
| lineage4.1.2.1 | 9 |
| lineage4.3.4.1;lineage4.9 | 2 |
| lineage4.8.1 | 2 |
| La1.3 | 1 |
| lineage5 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4 | 1 |
| lineage1.2.2.2 | 2 |
| lineage3.1.2.1 | 3 |
| lineage6.1.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage1.1.3.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.2.2 | 1 |
| lineage1.2.2 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage3.1.2 | 1 |
| lineage5.1.1 | 1 |
| La1.8.1 | 2 |
| lineage3.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| La2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 207 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046616 | Other | lineage4.3.1.1 | None | SRR5818389 | Other | lineage4.9 | None | ERR4817189 | Other | lineage4.7 | None | SRR5818404 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR9117788 | Other | lineage3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | SRR5818456 | Other | lineage4.9 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR5818408 | Other | lineage4.9 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR5818459 | Other | lineage4.9 | None | SRR6982088 | Other | lineage4.1.1.2 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4819324 | Other | lineage4.8 | gb | ERR4821214 | Other | lineage1.2.1.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR2515032 | Other | lineage3 | None | SRR1180446 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR2228941 | Other | lineage4.8 | None | ERR4815452 | Other | lineage4.3.3 | None | SRR25206863 | MDR-TB | lineage2.2.2 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818400 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR10796561 | Other | lineage4.3.2 | None | SRR7585400 | MDR-TB | lineage3 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | ERR369151 | Other | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR10796599 | Other | lineage4.8 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | ERR2229234 | Sensitive | lineage4.8 | None | ERR4816610 | Other | lineage4.3.3 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR5818436 | Sensitive | lineage4.9 | None | SRR7070293 | Other | lineage4.8 | None | SRR5818426 | Other | lineage4.9 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR7131061 | Other | lineage2.2.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR7070329 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816831 | Other | lineage4.1.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR5818391 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR7131030 | Other | lineage4.1.2.1 | None | SRR5818411 | RR-TB | lineage4.9 | None | SRR7069137 | Other | lineage4.8 | None | ERR4769436 | Other | La1.3 | None | ERR867544 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR5818466 | Other | lineage4.9 | None | ERR4816967 | Other | lineage5 | None | ERR4819198 | Other | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR5818434 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR11466514 | Sensitive | lineage4.3.4.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR867567 | RR-TB | lineage3 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR7069518 | Other | lineage4.8 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR7069839 | Other | lineage4.8 | None | SRR7070461 | Other | lineage3 | None | ERR4820324 | Other | lineage4 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815784 | Other | lineage2.2.1 | gb | SRR5818397 | Other | lineage4.9 | None | ERR4820151 | Other | lineage4.8 | None | SRR7070369 | Other | lineage1.2.2.2 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4819166 | Other | lineage3 | gb | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | SRR5818430 | Sensitive | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR6046815 | Other | lineage3 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR5818446 | Other | lineage4.9 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR5818429 | Sensitive | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR3675552 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | ERR10796633 | Other | lineage4.3.4.2 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4819772 | Other | lineage1.1.3.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | DRR188816 | Other | lineage4.2.2 | None | ERR4819002 | HR-TB | lineage4.8 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR4818126 | Other | lineage1.2.2 | None | ERR10796565 | Other | lineage4.9 | None | ERR4820188 | Other | lineage3 | gb | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR751345 | Other | lineage5.1.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR7070458 | Sensitive | lineage3 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR8073606 | Other | La1.8.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR11465833 | Sensitive | lineage4.3.2.1 | None | ERR10796598 | Other | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR4033549 | Other | lineage2.2.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR4818691 | Other | lineage4.8 | None | SRR6045957 | Other | lineage4.9 | None | SRR1791940 | Other | La1.8.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SRR5818452 | Other | lineage4.9 | None | SRR7068875 | Other | lineage3.1.2.2 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR10796635 | Other | lineage4.8 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819007 | Other | lineage2.2.1 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | SRR6856094 | Other | lineage2.2.1 | None | SRR5818402 | Other | lineage4.9 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR6046117 | Other | lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | ERR867575 | Other | lineage4.9 | None | SRR5818435 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR4819191 | Other | lineage4.6.2.2 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR5818449 | MDR-TB | lineage4.9 | None | ERR4820720 | Other | lineage4.1.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796563 | Other | lineage4.3.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR13888750 | Other | La2 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None |
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