Rv0668 - c.1086G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11 Sensitive
16 RR-TB
24 HR-TB
10 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 25 |
| lineage4.1.1.3 | 3 |
| lineage4.5 | 1 |
| lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La1.7.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage1.1.2;lineage4 | 1 |
| lineage4.1.2.1 | 6 |
| M.canetti;lineage2.1;lineage4.9 | 3 |
| lineage4.3.4.1 | 1 |
| La2;M.canetti | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage2.2.2 | 1 |
| La1.2 | 1 |
| lineage4.1.1.2 | 1 |
| La1;lineage4.9 | 1 |
| La2 | 1 |
| lineage4.1.1.1 | 2 |
| La1.8.1 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage3.1.1 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage4.3.3;lineage4.8 | 2 |
| lineage4.3.3 | 1 |
| lineage4.8 | 4 |
| lineage1 | 1 |
| lineage2.2.1 | 3 |
| 3 | |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| M.canetti | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 88 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769444 | HR-TB | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR13861153 | Other | lineage4.9 | None | SRR21469201 | Other | La1.7.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR4817692 | HR-TB | lineage1.1.2;lineage4 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1162864 | Other | lineage4.1.2.1 | None | ERR266126 | Sensitive | La2;M.canetti | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283042 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1063855 | Other | lineage4.9 | None | DRR213597 | MDR-TB | lineage2.2.2 | None | ERR4769418 | Other | La1.2 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR13861399 | Other | lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR5311077 | Other | La1.8.1 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR387051 | Other | lineage4.9 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR4818988 | Other | lineage1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358991 | HR-TB | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR266120 | Sensitive | M.canetti | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR176751 | Other | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1640750 | Other | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None |
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