EBG00000313339 - n.1096_1097delACinsT
Drug resistance types
11 Sensitive
20 RR-TB
10 HR-TB
26 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
120 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 13 |
| lineage2.2.1 | 47 |
| lineage4.8 | 26 |
| lineage4.6.2.2 | 2 |
| lineage4.3.3 | 10 |
| lineage2.2.2 | 6 |
| lineage4.3 | 2 |
| lineage6.2.3 | 1 |
| La1.6 | 1 |
| lineage4.4.2 | 2 |
| lineage4.9 | 16 |
| lineage4 | 2 |
| lineage1.1.3.2 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.2.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.2.2 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage3 | 11 |
| lineage3.1.1 | 6 |
| lineage4.2.2.2 | 3 |
| lineage4.1.2 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage3.1.2.1 | 3 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.3.4.2 | 3 |
| lineage4.7 | 6 |
| lineage4.1.3 | 3 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.8.1 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.5 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage4.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 2 |
| lineage3.1.2 | 1 |
| lineage4.1.1.1 | 2 |
| lineage3;lineage4 | 2 |
| lineage4.3.1.1 | 4 |
| lineage3.1.2.1;lineage4.9 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 204 |
Geographic prevalence
Country level data for this variant is available for 11 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7131145 | Other | lineage4.1.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | ERR4819324 | Other | lineage4.8 | gb | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR2513819 | Pre-XDR-TB | lineage4.3.3 | gb | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR4814767 | MDR-TB | lineage2.2.1 | None | ERR4821812 | Sensitive | lineage4.8 | gb | ERR10796630 | Other | lineage6.2.3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR7070320 | Other | lineage4.8 | None | SRR7070320 | Other | lineage4.8 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | SRR3675265 | Other | lineage4 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR11342669 | Other | lineage4.8 | None | SRR11342669 | Other | lineage4.8 | None | ERR4821917 | Sensitive | lineage1.1.3.2 | gb | ERR4821119 | Other | lineage4.4.1.1 | None | ERR867575 | Other | lineage4.9 | None | ERR867575 | Other | lineage4.9 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR7070521 | Other | lineage4.2.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR7070293 | Other | lineage4.8 | None | SRR7070293 | Other | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR19304104 | Other | lineage4.8 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR867572 | Other | lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR7069074 | Other | lineage3 | None | SRR7070419 | Other | lineage3 | None | SRR7070419 | Other | lineage3 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303815 | Other | lineage4.8 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR7070461 | Other | lineage3 | None | SRR7070461 | Other | lineage3 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR867521 | MDR-TB | lineage2.2.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SRR19303805 | Sensitive | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SRR7070144 | Other | lineage4.8 | None | SRR7070144 | Other | lineage4.8 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4819166 | Other | lineage3 | gb | SRR22048536 | Other | lineage4.3.3 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | SRR7070134 | Other | lineage3.1.1 | None | SRR7070134 | Other | lineage3.1.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR3675565 | Other | lineage4 | None | SRR7131229 | Other | lineage4.1.2.1 | None | ERR10796626 | Other | lineage4.1.2.1 | None | SRR6046117 | Other | lineage4.9 | None | SRR6046117 | Other | lineage4.9 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR4818050 | Sensitive | lineage4.6.2.2 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR11342680 | Other | lineage4.8 | None | ERR10796634 | Other | lineage4.7 | None | ERR10796634 | Other | lineage4.7 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR19303876 | Other | lineage4.7 | None | ERR4821286 | Other | lineage4.8 | None | ERR867555 | Other | lineage3 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR7070087 | Other | lineage4.8.1 | None | ERR4829337 | Sensitive | lineage4.8 | None | SRR7069946 | Other | lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | ERR4820891 | Sensitive | lineage4.9 | gb | DRR185024 | Other | lineage2.2.2 | None | ERR4820075 | Other | lineage4.1.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR4821679 | Other | lineage4.3.3 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR4818691 | Other | lineage4.8 | None | ERR4819593 | Sensitive | lineage4.5 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4815502 | Other | lineage4.1 | None | ERR867569 | Other | lineage4.9 | None | ERR4820151 | Other | lineage4.8 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | ERR4818200 | Other | lineage3.1.2 | gb | ERR2513830 | RR-TB | lineage4.8 | None | ERR2512841 | HR-TB | lineage2.2.1 | gb | ERR4815923 | Sensitive | lineage4.8 | None | ERR4814763 | Other | lineage2.2.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR4819002 | HR-TB | lineage4.8 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR4819528 | RR-TB | lineage3 | None | ERR10796559 | Other | lineage4.9 | None | ERR4817398 | Other | lineage3.1.1 | None | SRR7069193 | Other | lineage4.3.1.1 | None | SRR7069193 | Other | lineage4.3.1.1 | None | SRR9971223 | Other | lineage2.2.1 | None | SRR7131061 | Other | lineage2.2.1 | None | ERR4817874 | Other | lineage3 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4817189 | Other | lineage4.7 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046359 | Other | lineage4.7 | None | ERR4819198 | Other | lineage2.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None |
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