Rv0668 - c.1036_1038delAGGinsCC
Drug resistance types
54 Sensitive
20 RR-TB
67 HR-TB
27 MDR-TB
12 Pre-XDR-TB
3 XDR-TB
72 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 23 |
| lineage2.2 | 2 |
| lineage4.3.4 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage2;lineage4.9 | 2 |
| lineage4.9 | 109 |
| La2;lineage2.2 | 1 |
| lineage4 | 8 |
| lineage2.2.1;lineage4 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage2.2.1;lineage2.2.2 | 3 |
| La1.8.1 | 6 |
| lineage4.6.2.2 | 1 |
| La2 | 1 |
| lineage2.2.2 | 10 |
| La3;lineage4.9 | 4 |
| lineage4.3.2.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.8 | 5 |
| lineage4.1.2.1 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2.1.1 | 5 |
| La1.4 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage2.2.2;lineage4 | 4 |
| 1 | |
| lineage3.1;lineage9 | 1 |
| lineage3 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.5 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.6.5 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 2 |
| La2;lineage4.9 | 1 |
| lineage4.1.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6.1.2 | 1 |
| lineage4.1.2 | 1 |
| lineage4.1;lineage4.8 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage2 | 1 |
| lineage4.3.3 | 2 |
| La1;lineage4.9 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.1 | 1 |
| La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage2.2.1.1;lineage4 | 1 |
| La1.2.BCG | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 255 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9971114 | Other | lineage2.2.1 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | ERR4188213 | Other | La1.8.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR373947 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR16278274 | Other | La1.4 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR11465579 | Sensitive | lineage4.3.4.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR1049023 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | ERR987722 | MDR-TB | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR137286 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR3275450 | Other | lineage4 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR1013612 | Sensitive | lineage4.5 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR9896144 | Other | lineage3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR7236233 | Other | La1.8.1 | None | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR4817628 | Sensitive | lineage4.8 | gb | DRR213597 | MDR-TB | lineage2.2.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR1013610 | Sensitive | lineage4 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR9787030 | RR-TB | lineage6.1.2 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | ERR369162 | Other | lineage4.9 | None | SRR1013634 | MDR-TB | lineage2.2.2 | None | SRR1180345 | Other | lineage4.9 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1180440 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR3797067 | Other | La1.8.1 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4817204 | Other | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR4820773 | HR-TB | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR1049040 | HR-TB | lineage2 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | ERR926163 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR4816478 | HR-TB | lineage4 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR473332 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None |
|---|
