ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
ERR294266
|
MDR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
ERR4178226
|
Sensitive
|
lineage4
|
None
|
SRR12708398
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR4872119
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR363499
|
Other
|
lineage4.9
|
None
|
ERR6866639
|
HR-TB
|
lineage4.9
|
None
|
SRR1013607
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1175500
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
ERR4797474
|
Other
|
lineage4.9
|
None
|
SRR3675510
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR4819051
|
Sensitive
|
lineage4.9
|
None
|
SRR3675441
|
RR-TB
|
lineage4.9
|
None
|
ERR7911670
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR212034
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR4817998
|
Other
|
lineage3
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
ERR3797087
|
Sensitive
|
lineage4.9
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
ERR373945
|
Other
|
lineage4.9
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
SRR20632814
|
Sensitive
|
lineage4.9
|
None
|
SRR1013604
|
HR-TB
|
lineage2.2.1
|
None
|
SRR23961549
|
Other
|
La1.2
|
None
|
ERR4024991
|
HR-TB
|
lineage4.8;lineage4.9
|
None
|
SAMN02360583
|
HR-TB
|
lineage2.2.2
|
None
|
SRR6046295
|
MDR-TB
|
lineage4.2;lineage4.9
|
None
|
ERR6359070
|
Sensitive
|
lineage4.9
|
None
|
ERR3797067
|
Other
|
La1.8.1
|
None
|
SRR1013577
|
HR-TB
|
lineage2.2.2
|
None
|
ERR4816964
|
HR-TB
|
lineage4.9
|
None
|
SRR1013601
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1013613
|
Sensitive
|
lineage2.2.1
|
None
|
ERR1063839
|
MDR-TB
|
La2;lineage2.2
|
None
|
SRR1183049
|
RR-TB
|
lineage2.2
|
None
|
SRR1159378
|
Other
|
lineage4.9
|
None
|
SRR1013612
|
Sensitive
|
lineage4.5
|
None
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
ERR4817204
|
Other
|
lineage4.9
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR1791747
|
Other
|
La1.8.1
|
None
|
ERR926165
|
Other
|
lineage4.9
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
SRR1048994
|
HR-TB
|
lineage4.9
|
None
|
ERR6866410
|
HR-TB
|
lineage4.9
|
None
|
SRR1144809
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3283031
|
Other
|
La3;lineage4.9
|
None
|
ERR363506
|
Sensitive
|
lineage4.9
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
SRR1172310
|
MDR-TB
|
lineage4.9
|
None
|
ERR6866125
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR4831617
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
ERR245794
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR18913742
|
Sensitive
|
lineage3.1.3
|
None
|
SRR6046245
|
Other
|
lineage4.9
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
SRR1184021
|
Sensitive
|
lineage4.9
|
None
|
SRR1049676
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
SRR1048996
|
Sensitive
|
lineage4.5
|
None
|
SRR1048985
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1063857
|
MDR-TB
|
La2;lineage4.9
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
SRR5341384
|
HR-TB
|
lineage4.9
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR3283030
|
HR-TB
|
lineage4.9
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
SRR1013603
|
HR-TB
|
lineage2.2.1
|
None
|
SRR12708415
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1181351
|
Sensitive
|
lineage4.9
|
None
|
SRR16156817
|
Other
|
lineage4.9
|
None
|
SRR1013633
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02360590
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6046897
|
Sensitive
|
lineage4.9
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
SRR13888750
|
Other
|
La2
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|
ERR4821811
|
Sensitive
|
lineage4.9
|
None
|
SRR12708399
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1049040
|
HR-TB
|
lineage2
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4811031
|
Other
|
lineage4.5
|
None
|
ERR3283032
|
Other
|
lineage4.9
|
None
|
SRR1048982
|
HR-TB
|
lineage2.2.1.1
|
None
|
SAMN02360570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3675580
|
Sensitive
|
lineage4.9
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
SRR1048998
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4188213
|
Other
|
La1.8.1
|
None
|
SRR12708411
|
HR-TB
|
lineage1.2.2.2
|
None
|
ERR502524
|
MDR-TB
|
lineage4.9;lineage6.3
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
SAMN02360591
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5341323
|
Sensitive
|
lineage4.9
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
SRR6045371
|
Other
|
lineage4.9
|
None
|
ERR363498
|
Other
|
lineage4.9
|
None
|
SRR1013608
|
Sensitive
|
lineage2.2.2
|
None
|
SRR3675585
|
HR-TB
|
lineage4.9
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
SRR5341387
|
Other
|
lineage4.9
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
SAMN02360580
|
HR-TB
|
lineage2.2.1
|
None
|
ERR751326
|
Other
|
lineage4.9
|
None
|
ERR1023525
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
SRR1180319
|
Sensitive
|
lineage4.9
|
None
|
SRR1048870
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR1049041
|
HR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
SRR6045706
|
Other
|
lineage4.9
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
ERR4796254
|
Other
|
lineage4.9
|
None
|
SRR1013629
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
ERR12015084
|
Other
|
lineage4.8
|
None
|
ERR4819877
|
HR-TB
|
lineage4.9
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
ERR4829606
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR323039
|
MDR-TB
|
La2;lineage4.9
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
SRR1183111
|
HR-TB
|
lineage4.9
|
None
|
SRR1048975
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
SRR12708384
|
Sensitive
|
lineage4.9
|
None
|
SRR10808399
|
Sensitive
|
lineage4.9
|
None
|
SRR3675541
|
Sensitive
|
lineage4.9
|
None
|
SRR9971112
|
HR-TB
|
lineage2.2.1
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR1181289
|
RR-TB
|
lineage2.2.1
|
None
|
SRR8217918
|
HR-TB
|
lineage4.9
|
None
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
ERR4819462
|
Sensitive
|
lineage4.9
|
None
|
ERR6359069
|
HR-TB
|
lineage4.9
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
SRR1181091
|
Other
|
lineage2.2.1.1
|
None
|
ERR363490
|
Other
|
lineage4.9
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
SRR13583478
|
HR-TB
|
lineage4.3.4.1
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
SRR1013610
|
Sensitive
|
lineage4
|
None
|
SRR1049007
|
HR-TB
|
lineage2.2.2
|
None
|
SRR3675229
|
Sensitive
|
lineage4.9
|
None
|
ERR3290633
|
Other
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
ERR369160
|
Sensitive
|
lineage4.9
|
None
|
SRR1013569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
SRR14066533
|
RR-TB
|
lineage1.1.1
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
SRR1013567
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR12708372
|
Sensitive
|
lineage4.9
|
None
|
SRR5341437
|
Sensitive
|
lineage4.9
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
SRR3675246
|
Other
|
lineage4.9
|
None
|
ERR3445487
|
Other
|
La1.7.X-unk4
|
None
|
ERR5311097
|
Other
|
lineage4.2;lineage4.6.3;lineage4.9
|
None
|
ERR4821276
|
Sensitive
|
lineage3
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
SAMN02360563
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048992
|
HR-TB
|
lineage2.2;lineage4
|
None
|
SRR1048853
|
HR-TB
|
lineage2;lineage4.9
|
None
|
SRR1180147
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR702404
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
SAMN02360564
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR1184329
|
Other
|
lineage4.9
|
None
|
SRR6044819
|
Sensitive
|
lineage4.9
|
None
|
SRR3675247
|
Other
|
lineage4.9
|
None
|
ERR9787153
|
Other
|
lineage6.1.3
|
None
|
ERR4798431
|
Other
|
lineage4.1;lineage4.9
|
None
|
SRR6044835
|
Other
|
lineage4.9
|
None
|
ERR5311094
|
HR-TB
|
lineage4.9
|
None
|
SRR1184024
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR8758877
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4819809
|
HR-TB
|
lineage4.6.2.2
|
None
|
SRR5341425
|
Other
|
lineage4.9
|
None
|
SRR1048981
|
HR-TB
|
lineage3
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
SRR1048969
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR9992879
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
ERR2517475
|
Other
|
lineage4
|
None
|
SRR6045892
|
Sensitive
|
lineage4.9
|
None
|
SRR3675574
|
Other
|
lineage4.6.3;lineage4.9;lineage6.3
|
None
|
ERR1023509
|
MDR-TB
|
lineage4.9
|
None
|
ERR4817915
|
Other
|
lineage4.9
|
None
|
ERR2446382
|
Other
|
lineage4
|
None
|
SRR1180446
|
Other
|
lineage4.9
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR1175491
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR3675260
|
Sensitive
|
lineage4.9
|
None
|
ERR3283057
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR1180172
|
RR-TB
|
lineage2.2.1
|
None
|
SRR12708419
|
Other
|
lineage4.3.3
|
None
|
ERR6865513
|
Other
|
lineage4.1.2.1
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
ERR736834
|
HR-TB
|
lineage4.9
|
None
|
SRR1049006
|
HR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR3283026
|
HR-TB
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
ERR1034634
|
HR-TB
|
lineage4.9
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
ERR736863
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
ERR4815815
|
Sensitive
|
lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
SRR1013553
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11465579
|
Sensitive
|
lineage4.3.4.1
|
None
|
SRR7496523
|
Other
|
lineage4.7
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
ERR926160
|
Other
|
lineage4.9
|
None
|
ERR4818252
|
HR-TB
|
lineage4.1.1.2
|
None
|
SRR12708374
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
ERR6866547
|
Other
|
La1.7;lineage4.9;lineage6
|
None
|
ERR6358979
|
HR-TB
|
lineage4.9
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
ERR369162
|
Other
|
lineage4.9
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
SRR1013602
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4818710
|
Sensitive
|
lineage4.9
|
None
|
ERR3806850
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR4797264
|
HR-TB
|
lineage4.9
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR779852
|
HR-TB
|
lineage4.9
|
None
|
SRR3675449
|
RR-TB
|
M.canetti;lineage4.9
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR9786656
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR17567917
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR4769493
|
Other
|
lineage4.9
|
None
|
SRR1048991
|
HR-TB
|
lineage2;lineage4.9
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
ERR702405
|
HR-TB
|
lineage4.9
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR400320
|
Sensitive
|
lineage4.9
|
None
|
SRR1048980
|
HR-TB
|
lineage3
|
None
|
SRR1180420
|
Sensitive
|
lineage4.9
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
ERR9786076
|
Other
|
lineage3
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR1013598
|
Sensitive
|
lineage2.2.2;lineage4
|
None
|
SRR1013596
|
Sensitive
|
lineage3
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
ERR9786592
|
Other
|
lineage4.3.4.2
|
None
|
SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4798504
|
RR-TB
|
lineage3
|
None
|
ERR7801175
|
HR-TB
|
lineage4.6.5
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
ERR363474
|
Sensitive
|
lineage4.9
|
None
|
ERR4821686
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6044942
|
HR-TB
|
lineage4.9
|
None
|
SRR3675455
|
Sensitive
|
lineage4.9
|
None
|
SRR3675473
|
Sensitive
|
lineage4.9
|
None
|
SAMN02360581
|
HR-TB
|
lineage2.2.1
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
SRR1013621
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
SRR5341300
|
HR-TB
|
lineage4.9
|
None
|
SRR1049004
|
HR-TB
|
lineage2.2.2
|
None
|
ERR323115
|
Sensitive
|
lineage4.9
|
None
|
ERR9119669
|
MDR-TB
|
lineage4.9
|
None
|
ERR067699
|
HR-TB
|
La1;lineage2;lineage4.9
|
None
|
ERR4769508
|
RR-TB
|
lineage4.9
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR4872269
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9786526
|
Other
|
lineage4.1;lineage4.8
|
None
|
ERR373946
|
Other
|
lineage4.9
|
None
|
SRR1048987
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9786164
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR4769521
|
RR-TB
|
lineage4.9
|
None
|
ERR1063883
|
HR-TB
|
lineage4.9
|
None
|
SRR1183965
|
Sensitive
|
lineage4.9
|
None
|
ERR6865502
|
Sensitive
|
lineage4
|
None
|
ERR970449
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
SRR14801749
|
HR-TB
|
lineage4.9
|
None
|
ERR4817628
|
Sensitive
|
lineage4.8
|
gb
|
ERR349330
|
Sensitive
|
lineage4.9
|
None
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
ERR3797019
|
Other
|
La1.8.1
|
None
|
SRR15315797
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1048885
|
HR-TB
|
lineage2.2;lineage4
|
None
|
SRR6046397
|
RR-TB
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
DRR213597
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR323045
|
HR-TB
|
lineage1;lineage4.9
|
None
|
SRR5341308
|
HR-TB
|
lineage4.9
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
ERR3797063
|
Other
|
La3;lineage4.9
|
None
|
SRR1175508
|
Sensitive
|
lineage4.9
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
SRR3675248
|
Other
|
lineage4.9
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
SRR5341461
|
HR-TB
|
lineage4.9
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
ERR4811035
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
SRR3675477
|
Sensitive
|
lineage4.9
|
None
|
ERR349299
|
Other
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR1048868
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6511621
|
HR-TB
|
lineage4.9
|
None
|
SAMN02360574
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1013584
|
HR-TB
|
lineage2.2.2
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
ERR9786525
|
RR-TB
|
lineage4.1;lineage4.8
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
ERR4815079
|
RR-TB
|
lineage3
|
None
|
ERR405209
|
Sensitive
|
La1.7;lineage4.9
|
None
|
SRR3675488
|
Other
|
La1.7;lineage4.9
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR4829530
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
SRR12006550
|
Other
|
lineage1.2.1.2
|
None
|
ERR4797193
|
HR-TB
|
lineage1.1.2
|
None
|
SRR5341453
|
Other
|
lineage4.9
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
ERR3283014
|
Other
|
La3;lineage4.9
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR363502
|
Other
|
lineage4.9
|
None
|
SRR19295647
|
HR-TB
|
lineage4.9
|
None
|
ERR4820410
|
RR-TB
|
lineage3.1.1
|
None
|
SRR6832644
|
Other
|
lineage4.3.3;lineage4.9
|
None
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR363453
|
Other
|
lineage4.9
|
None
|
SRR21677886
|
Sensitive
|
lineage4.9
|
None
|
SRR9970978
|
Other
|
La1;lineage4.1.2
|
None
|
ERR369156
|
Sensitive
|
lineage4.9
|
None
|
SRR5341467
|
Other
|
lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045785
|
MDR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
SRR1013599
|
HR-TB
|
lineage2.2.1.1;lineage4
|
None
|
ERR502510
|
HR-TB
|
lineage4.9
|
None
|
ERR363500
|
Other
|
lineage4.9
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
SRR5341299
|
HR-TB
|
lineage4.9
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3283021
|
MDR-TB
|
lineage4.9
|
None
|
ERR4831545
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR349266
|
Other
|
lineage4.9
|
None
|
ERR473334
|
HR-TB
|
lineage4.9
|
None
|
SRR5341469
|
HR-TB
|
lineage4.9
|
None
|
SRR1049023
|
HR-TB
|
lineage4.9
|
None
|
ERR369159
|
Other
|
lineage4.9
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
SAMN02360579
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR1063896
|
HR-TB
|
|
None
|
ERR11252558
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR3283042
|
HR-TB
|
lineage4.9
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR4819314
|
HR-TB
|
lineage1.1.1
|
None
|
ERR4819241
|
Other
|
lineage4.9
|
None
|
SAMN02360577
|
HR-TB
|
lineage3
|
None
|
ERR363449
|
Other
|
lineage4.9
|
None
|
ERR4797184
|
HR-TB
|
lineage4.9
|
None
|
SRR10809074
|
HR-TB
|
lineage4.9
|
None
|
SRR6045399
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR18910194
|
HR-TB
|
lineage2.2.2
|
None
|
SRR3675235
|
HR-TB
|
lineage4.9
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
ERR4797201
|
Other
|
lineage1.2.2.2
|
None
|
SRR25827418
|
XDR-TB
|
lineage3.1;lineage9
|
None
|
ERR6866807
|
RR-TB
|
lineage4.9
|
None
|
ERR137286
|
Other
|
lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
SRR1140574
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR1013589
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4769530
|
RR-TB
|
lineage4.9
|
None
|
SRR1013634
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
SRR1180440
|
Other
|
lineage4.9
|
None
|
ERR369157
|
Sensitive
|
lineage4.9
|
None
|
SRR5341298
|
Other
|
lineage4.9
|
None
|
ERR3275450
|
Other
|
lineage4
|
None
|
ERR369158
|
Other
|
lineage4.9
|
None
|
ERR369151
|
Other
|
lineage4.9
|
None
|
ERR2693252
|
HR-TB
|
lineage4.9
|
None
|
SRR1048965
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
ERR4818929
|
HR-TB
|
lineage4.9
|
None
|
ERR3797065
|
RR-TB
|
lineage4.9
|
None
|
SRR1047993
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7801176
|
RR-TB
|
lineage4.6.5
|
None
|
SRR10315466
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4178309
|
Other
|
lineage4.1.2.1
|
None
|
ERR9896144
|
Other
|
lineage3
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR926156
|
Other
|
lineage4.9
|
None
|
SRR1180226
|
HR-TB
|
lineage4.9
|
None
|
ERR2512770
|
Sensitive
|
lineage4.2.1
|
None
|
ERR4799547
|
HR-TB
|
lineage2.2.1
|
None
|
ERR990545
|
RR-TB
|
lineage3
|
None
|
ERR2026698
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
SRR7236233
|
Other
|
La1.8.1
|
None
|
SRR1049026
|
HR-TB
|
lineage2.2;lineage4.9
|
None
|
ERR349265
|
Other
|
lineage4.9
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
SAMN02360586
|
HR-TB
|
lineage2.2.1
|
None
|
SAMN02360571
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
ERR363426
|
Sensitive
|
lineage4.9
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR400345
|
Other
|
lineage4.9
|
None
|
SRR1062920
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
ERR9119525
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR1048869
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
ERR9029360
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6045327
|
Other
|
lineage2.1;lineage4.3.2;lineage4.9
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
SAMN02360595
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7496471
|
Sensitive
|
lineage4
|
None
|
ERR4811030
|
Other
|
lineage4.9
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR4818583
|
Other
|
lineage4.3.3
|
None
|
ERR4872094
|
MDR-TB
|
lineage5.2
|
None
|
ERR349264
|
Other
|
lineage4.9
|
None
|
ERR1035122
|
HR-TB
|
lineage4.9
|
None
|
SRR1013617
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
ERR3283047
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
ERR736865
|
MDR-TB
|
lineage4.3.2;lineage4.9
|
None
|
ERR212121
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR1049027
|
HR-TB
|
lineage2.2.2;lineage4.9
|
None
|
SRR3675522
|
Other
|
lineage4.9
|
None
|
SRR1013554
|
MDR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR4769436
|
Other
|
La1.3
|
None
|
SRR14801759
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
ERR4816904
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR3797081
|
Sensitive
|
lineage4.9
|
None
|
ERR3797073
|
Other
|
La1.8.1
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
SRR3675387
|
Other
|
lineage4.9
|
None
|
SRR5341296
|
Sensitive
|
lineage4.9
|
None
|
ERR4831621
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR363445
|
Other
|
lineage4.9
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR363509
|
Sensitive
|
lineage4.9
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR6044876
|
Sensitive
|
lineage4.9
|
None
|
ERR9119500
|
MDR-TB
|
lineage5.2
|
None
|
SRR5341455
|
Sensitive
|
lineage4.9
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
ERR1873492
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
ERR373947
|
Other
|
lineage4.9
|
None
|
SRR1173310
|
Other
|
lineage3.1.1
|
None
|
SRR9971122
|
MDR-TB
|
lineage4.8
|
None
|
ERR6358991
|
HR-TB
|
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3
|
None
|
SRR16278274
|
Other
|
La1.4
|
None
|
ERR9787030
|
RR-TB
|
lineage6.1.2
|
None
|
ERR7821163
|
Other
|
lineage2.2.1
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR5709926
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1183106
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR1183144
|
RR-TB
|
lineage2.2.1
|
None
|
ERR6866022
|
HR-TB
|
lineage4.8;lineage4.9
|
None
|
SRR1175507
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
ERR4818110
|
Sensitive
|
lineage4.9
|
None
|
SRR1915487
|
Other
|
La1.2.BCG
|
None
|
SRR1013618
|
RR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR1013597
|
Sensitive
|
lineage2.2.2;lineage4
|
None
|
SRR6045233
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR6045503
|
Other
|
lineage4.9
|
None
|
ERR2026697
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SAMN02360585
|
HR-TB
|
lineage4.5
|
None
|
SRR6046026
|
RR-TB
|
lineage4.2;lineage4.9
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
ERR736856
|
HR-TB
|
lineage4.9
|
None
|
ERR108125
|
RR-TB
|
lineage4.9
|
None
|
SRR1048966
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR971389
|
Other
|
lineage4.9
|
None
|
ERR181824
|
MDR-TB
|
lineage4.9
|
None
|
ERR176560
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR1013630
|
Pre-XDR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR363456
|
Sensitive
|
lineage4.9
|
None
|
ERR8479578
|
HR-TB
|
lineage1.1.3.1
|
None
|
SRR1047996
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR234659
|
HR-TB
|
|
None
|
SRR28351339
|
MDR-TB
|
lineage4
|
None
|
SRR12708416
|
Sensitive
|
|
None
|
ERR4828872
|
RR-TB
|
lineage4.2;lineage4.9
|
None
|
SRR1049677
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR1180137
|
RR-TB
|
lineage2.2.1
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR1034652
|
Other
|
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2
|
None
|
ERR4797350
|
Sensitive
|
lineage1;lineage4.9
|
None
|
ERR926155
|
Other
|
lineage4.9
|
None
|
ERR9786911
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR1013609
|
Sensitive
|
lineage4
|
None
|
SRR1048997
|
HR-TB
|
lineage2.2.1
|
None
|
SRR11349147
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR1175472
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
SRR6045010
|
Sensitive
|
lineage4.9
|
None
|
ERR3283040
|
HR-TB
|
lineage4.9
|
None
|
ERR4816762
|
Sensitive
|
lineage4.9
|
None
|
SRR10808668
|
Other
|
lineage2.2.1
|
None
|
SRR3675571
|
MDR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
SRR29772570
|
Other
|
lineage4.9
|
None
|
ERR3283028
|
Other
|
La3;lineage4
|
None
|
ERR369163
|
Other
|
lineage4.9
|
None
|
ERR4831546
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
ERR502511
|
HR-TB
|
lineage4.9
|
None
|
SRR18511647
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1013614
|
Sensitive
|
lineage2.2.1
|
None
|
SRR3675292
|
Sensitive
|
lineage4.9
|
None
|
SRR5341310
|
Other
|
lineage1.1.2
|
None
|
SRR6046210
|
Other
|
lineage4.9
|
None
|
SRR1184308
|
RR-TB
|
lineage4.9
|
None
|
ERR323107
|
HR-TB
|
lineage4.9
|
None
|
ERR349300
|
Other
|
lineage4.9
|
None
|
ERR363421
|
Other
|
lineage4.9
|
None
|
ERR363479
|
Other
|
lineage4.9
|
None
|
ERR369161
|
Sensitive
|
lineage4.9
|
None
|
ERR4798099
|
HR-TB
|
lineage4.9
|
None
|
ERR4814734
|
Other
|
lineage1.2.1.1
|
None
|
ERR124636
|
HR-TB
|
lineage4.9
|
None
|
ERR4830353
|
HR-TB
|
La1.7
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831616
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR216938
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR363446
|
Other
|
lineage4.9
|
None
|
SRR6045359
|
HR-TB
|
lineage4.9
|
None
|
ERR9786843
|
Other
|
|
None
|
ERR11252736
|
Other
|
lineage4.9
|
None
|
ERR987722
|
MDR-TB
|
|
None
|
ERR323062
|
HR-TB
|
lineage4.9
|
None
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR176651
|
Other
|
lineage4.9
|
None
|
ERR323066
|
HR-TB
|
lineage4.9
|
None
|
SRR1013622
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048993
|
HR-TB
|
lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
SRR12708413
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR926157
|
Other
|
lineage4.9
|
None
|
SRR1144744
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1158918
|
Other
|
lineage4.9
|
None
|
SRR14782539
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7236177
|
Other
|
La1.8.1
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
ERR2517457
|
Sensitive
|
lineage3
|
None
|