Rv0668 - c.1041G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
68 Sensitive
16 RR-TB
43 HR-TB
14 MDR-TB
5 Pre-XDR-TB
2 XDR-TB
52 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 99 |
| lineage4.3.4.1 | 2 |
| lineage4.1.2.1 | 8 |
| 2 | |
| La2;lineage2.2 | 1 |
| lineage2;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4 | 3 |
| lineage2.2.1 | 16 |
| lineage4.8 | 7 |
| La2;lineage4.9 | 1 |
| lineage4.4.2 | 1 |
| La3;lineage4.9 | 8 |
| lineage2.2.2 | 2 |
| La1.2 | 1 |
| lineage4.6.1 | 1 |
| lineage4.5 | 2 |
| lineage6 | 2 |
| lineage3.1.2.1;lineage4.9 | 1 |
| La1.8.1 | 2 |
| lineage4.6.1.2 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage3 | 5 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.3.4 | 1 |
| lineage4.4.1.1.1 | 2 |
| La3;lineage4 | 1 |
| lineage4.3.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.1.2.1;lineage4.3.4.2.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.2.2.2 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage3.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 200 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11662690 | HR-TB | lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | DRR213597 | MDR-TB | lineage2.2.2 | None | SRR5341330 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR752229 | Other | lineage4.5 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR4188213 | Other | La1.8.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR11465626 | Sensitive | lineage4.3.4.2.1 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR6359082 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4821143 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5535933 | Other | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR1023494 | Sensitive | lineage3 | None | ERR1063855 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3283028 | Other | La3;lineage4 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR7236233 | Other | La1.8.1 | None | SRR14782054 | Other | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR2517457 | Sensitive | lineage3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR11662694 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4769450 | Other | lineage4.9 | None | ERR11465234 | Sensitive | lineage4.1.2.1;lineage4.3.4.2.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR7535086 | Other | None | ERR4769493 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None |
|---|
