lineage | Count |
---|---|
lineage4.6.1.1 | 1 |
La1;lineage4.9 | 1 |
lineage4.9 | 25 |
lineage4.1.1.3 | 2 |
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
lineage4.8 | 3 |
lineage2.2.1 | 11 |
lineage4.6.1.2 | 4 |
1 | |
lineage3 | 3 |
La3;lineage4.9 | 1 |
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
lineage3.1.2.1;lineage3.1.2.2 | 1 |
M.canetti;lineage4.9;lineage9 | 1 |
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
La1.7.1 | 1 |
lineage4.1.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage2.1;lineage4.9 | 1 |
La1;lineage2;lineage4.9 | 1 |
La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
lineage4.9;lineage9 | 3 |
lineage4.3.4.1 | 2 |
lineage4.6.3;lineage4.9 | 2 |
La1.7;lineage4.9 | 2 |
lineage4.9;lineage6.3 | 1 |
La1.7.X-unk4;lineage4.9 | 1 |
La2;lineage4.9 | 1 |
La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
La1.6;La3;lineage4.9 | 2 |
La3;lineage4.3.4 | 1 |
La2;lineage4.9;lineage9 | 1 |
lineage4.2.1 | 1 |
lineage3.1.1 | 1 |
lineage6.1.3 | 1 |
lineage6.1.1 | 2 |
La1.2.BCG | 1 |
lineage2.2.1.1 | 1 |
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
lineage4.3.2;lineage4.9 | 1 |
lineage2.1;lineage4.9;lineage6.3 | 1 |
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
lineage4.1.2.1 | 1 |
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
lineage4.9.1 | 1 |
lineage4.3.3 | 1 |
lineage3.1.2.1 | 1 |
lineage4.6.5 | 2 |
lineage1;lineage4.9 | 1 |
La1.8.1 | 2 |
M.canetti;lineage2.1;lineage4.9 | 1 |
lineage3.1.2.2 | 1 |
M.canetti;lineage1 | 1 |
lineage2.2.1;lineage3;lineage4 | 1 |
spoligotype | Count |
---|---|
None | 109 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR7535047 | RR-TB | lineage4.6.1.1 | None |
ERR133825 | HR-TB | La1;lineage4.9 | None |
SRR29096150 | Other | lineage4.9 | None |
SRR29097026 | Other | lineage4.9 | None |
SRR29231231 | Sensitive | lineage4.1.1.3 | None |
ERR5311094 | HR-TB | lineage4.9 | None |
SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
ERR4816151 | Sensitive | lineage4.8 | None |
ERR4818110 | Sensitive | lineage4.9 | None |
ERR4800527 | MDR-TB | lineage2.2.1 | None |
SRR1049582 | MDR-TB | lineage4.6.1.2 | None |
ERR987722 | MDR-TB | None | |
SRR19295647 | Sensitive | lineage4.9 | None |
SRR1140724 | Other | lineage2.2.1 | None |
SRR17832802 | HR-TB | lineage3 | None |
SRR1049674 | HR-TB | lineage2.2.1 | None |
ERR181744 | HR-TB | La3;lineage4.9 | None |
SRR1172310 | HR-TB | lineage4.9 | None |
ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None |
ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None |
ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None |
ERR9119733 | MDR-TB | lineage2.2.1 | None |
ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
SRR1792478 | HR-TB | La1.7.1 | None |
SRR17658565 | Pre-XDR-TB | lineage3 | None |
SRR11342642 | MDR-TB | lineage4.1.1.1 | None |
ERR176518 | Sensitive | lineage4.3.4.2.1 | None |
ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None |
ERR3797015 | HR-TB | lineage4.9 | None |
ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None |
SAMN02380990 | MDR-TB | lineage4.6.1.2 | None |
ERR161037 | Other | lineage4.9 | None |
ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None |
SRR6046720 | HR-TB | lineage4.9;lineage9 | None |
ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
ERR5987263 | MDR-TB | lineage2.2.1 | None |
ERR11465352 | Sensitive | lineage4.3.4.1 | None |
ERR502470 | RR-TB | lineage4.9 | None |
SRR1183111 | HR-TB | lineage4.9 | None |
SRR6045892 | Sensitive | lineage4.9 | None |
ERR7821163 | Other | lineage2.2.1 | None |
ERR11252558 | Other | lineage4.6.3;lineage4.9 | None |
ERR176560 | HR-TB | La1.7;lineage4.9 | None |
ERR4817915 | Other | lineage4.9 | None |
ERR502524 | HR-TB | lineage4.9;lineage6.3 | None |
SRR6045010 | Sensitive | lineage4.9 | None |
SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None |
SRR1062919 | HR-TB | lineage2.2.1 | None |
ERR323039 | HR-TB | La2;lineage4.9 | None |
ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None |
ERR3797061 | Other | La1.6;La3;lineage4.9 | None |
ERR9786444 | Sensitive | lineage4.8 | None |
SRR1174897 | MDR-TB | lineage4.9;lineage9 | None |
ERR3283030 | HR-TB | lineage4.9 | None |
ERR161039 | HR-TB | La3;lineage4.3.4 | None |
SRR5341470 | MDR-TB | lineage4.9;lineage9 | None |
ERR3283021 | HR-TB | lineage4.9 | None |
ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None |
SRR14802079 | MDR-TB | lineage4.2.1 | None |
ERR4820410 | RR-TB | lineage3.1.1 | None |
ERR3797047 | MDR-TB | lineage4.9 | None |
ERR11465353 | Sensitive | lineage4.3.4.1 | None |
ERR9787153 | Other | lineage6.1.3 | None |
ERR3799304 | Other | lineage6.1.1 | None |
SRR9971080 | RR-TB | lineage2.2.1 | None |
ERR4798262 | HR-TB | La1.2.BCG | None |
ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
ERR4814896 | Other | lineage2.2.1.1 | None |
SRR26159047 | Other | lineage4.6.3;lineage4.9 | None |
ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None |
SRR10808730 | Other | lineage4.9 | None |
ERR212034 | HR-TB | La1.7;lineage4.9 | None |
SRR1180226 | HR-TB | lineage4.9 | None |
ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None |
SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
SRR29096410 | Other | lineage4.9 | None |
ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None |
SRR1140712 | MDR-TB | lineage4.6.1.2 | None |
ERR9786986 | HR-TB | lineage4.1.2.1 | None |
ERR3283040 | HR-TB | lineage4.9 | None |
SRR1049675 | HR-TB | lineage2.2.1 | None |
ERR9787014 | Other | lineage6.1.1 | None |
ERR2514327 | HR-TB | lineage4.8 | None |
ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None |
ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None |
ERR473323 | HR-TB | lineage4.9 | None |
ERR245758 | Other | lineage4.9.1 | None |
ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
SRR5153091 | HR-TB | lineage4.3.3 | None |
ERR4816717 | RR-TB | lineage3.1.2.1 | None |
ERR7801175 | HR-TB | lineage4.6.5 | None |
ERR7801176 | RR-TB | lineage4.6.5 | None |
ERR323045 | HR-TB | lineage1;lineage4.9 | None |
ERR2693254 | Other | La1.6;La3;lineage4.9 | None |
SRR16156817 | Other | lineage4.9 | None |
ERR212123 | Other | lineage4.9 | None |
SRR13423649 | Sensitive | lineage2.2.1 | None |
ERR3797019 | Other | La1.8.1 | None |
ERR4819051 | Sensitive | lineage4.9 | None |
SRR29231239 | Sensitive | lineage4.1.1.3 | None |
ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None |
ERR4798648 | MDR-TB | lineage3.1.2.2 | None |
ERR4798504 | RR-TB | lineage3 | None |
SRR15014655 | Other | M.canetti;lineage1 | None |
SRR1049581 | MDR-TB | lineage4.6.1.2 | None |
ERR3439489 | RR-TB | La1.8.1 | None |
SRR26399265 | Other | lineage2.2.1 | None |
SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None |
ERR4816466 | HR-TB | lineage4.9 | None |