Rv0682 - c.276T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
15 Sensitive
8 RR-TB
34 HR-TB
17 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.1.2 | 4 |
| lineage4.9 | 25 |
| La1.8.1 | 2 |
| lineage4.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage2.2.1 | 11 |
| lineage4.3.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.7;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 2 |
| 1 | |
| lineage4.3.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage6.1.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage3 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 2 |
| lineage3.1.1 | 1 |
| lineage4.3.4.1 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 3 |
| lineage4.3.4 | 1 |
| lineage4.9.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.8 | 3 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.1.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.6.5 | 2 |
| M.canetti;lineage1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 107 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR29096150 | Other | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR10808730 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4798504 | RR-TB | lineage3 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3797019 | Other | La1.8.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR29231231 | Sensitive | lineage4.1.1.3 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR16156817 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR29231239 | Sensitive | lineage4.1.1.3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR9786444 | Sensitive | lineage4.8 | None |
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