Rv0006 - c.324G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
4 RR-TB
21 HR-TB
10 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
102 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 23 |
| lineage4.8 | 4 |
| lineage4.3.4 | 1 |
| 23 | |
| lineage4.9.1 | 1 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage4.9;lineage6.3 | 7 |
| lineage2.2.1 | 12 |
| lineage6.2.3 | 1 |
| lineage6 | 1 |
| lineage2.2.1.1 | 4 |
| lineage2.1;lineage4.9 | 10 |
| lineage4.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.1.2.1 | 7 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage2.2.1.2 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;lineage4.9 | 3 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4 | 2 |
| lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.6.1 | 1 |
| lineage3 | 1 |
| lineage4.7 | 1 |
| lineage5.2 | 2 |
| lineage4.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.1 | 1 |
| lineage3.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 142 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045526 | Other | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4811142 | RR-TB | None | ERR4815752 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR9787061 | Sensitive | lineage6.2.3 | None | ERR9787165 | Other | lineage6 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675311 | Other | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR3675221 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR3283044 | Other | lineage4 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR4817060 | Other | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1173363 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR4815604 | Other | None | SRR7496517 | Other | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | SRR6046066 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | SRR6789626 | Other | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786569 | Other | lineage4.8 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR702406 | Other | lineage2.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR6045555 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | ERR4819322 | Other | lineage1.1;lineage4 | None |
|---|
