EBG00000313339 - n.819C>T


Drug resistance types
12 Sensitive 44 RR-TB 15 HR-TB 45 MDR-TB 23 Pre-XDR-TB 1 XDR-TB 174 Other
lineage Counts
lineage Count
lineage4.9 40
lineage4.1.1.3.1 3
lineage3.1.2.2 2
lineage3 10
lineage1.2.2.2 4
lineage4.4.1.1 9
lineage4.2.1.1 2
4
lineage4.8 35
lineage2.2.1 50
lineage4 17
lineage4.6.5 3
lineage1.1.2 2
lineage4.3.2 2
lineage4.3.4.1 5
lineage4.4.1.2 1
La1.8.1 9
lineage4.3.4.2 5
lineage4.1.2.1 18
lineage2.2.1.1 3
lineage2.2.2 5
lineage4.6.2.2 3
lineage4.8.1 2
lineage4.2.1 1
lineage4.9;lineage1.1 1
lineage4.9;lineage4.1 1
lineage4.9;lineage4.3.4 1
lineage4.1.2 3
lineage4.1.1 1
lineage4.3.3 8
lineage4.3.4 1
lineage4.1.4 1
lineage6.2.3;lineage1.1.2 1
lineage4.1.1.3 9
La1.7.X-unk4 1
lineage4.5;lineage2.2.1 1
lineage4.1.1.2 1
lineage3.1.3 2
lineage4.3.1.1 2
lineage4.8;lineage4.3.3 4
lineage4.7 4
lineage4.2.2.2 2
lineage4.4.2 3
lineage3.1.1 4
La2 1
lineage2.2.2;lineage2.2.1 1
lineage2.2 3
lineage4.2.2 1
lineage4.5 1
lineage4.4 2
lineage6 1
La1.7.1 3
lineage6.1.1 1
lineage4.8;lineage4.1.2 1
lineage4.9;lineage3.1.1 1
lineage4.8;lineage4.2.1.1 1
lineage5 1
lineage1.2.1.1 1
lineage3.1 1
lineage4;lineage3 1
lineage4.1.1.3.1;lineage3.1.2 1
lineage1.1.3.1 1
lineage6.1.3 1
lineage4.9;lineage4.2.1 1
lineage4.2.2.2;lineage3 1
lineage4.3.4.2.1 1
lineage4.8.2 1
spoligotype Counts
spoligotype Count
None 314
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR2851359 Other lineage4.9 None
SRR6046456 Other lineage4.1.1.3.1 None
SRR6046440 Other lineage3.1.2.2 None
SRR6046442 Other lineage3 None
SRR6046484 Other lineage1.2.2.2 None
SRR6046463 Other lineage4.4.1.1 None
SRR6397640 Other lineage4.2.1.1 None
SRR6046482 HR-TB None
SRR6046497 Other lineage4.9 None
SRR6046517 Other lineage4.8 None
SRR6046729 Other None
SRR6046733 Pre-XDR-TB lineage2.2.1 None
SRR6046802 Other lineage4 None
SRR6046815 Other lineage3 None
SRR6046848 Other lineage4.6.5 None
SRR6046534 Other lineage1.1.2 None
SRR7131123 Other lineage4.8 None
ERR4972567 MDR-TB lineage4.3.2 None
ERR2984800 Pre-XDR-TB lineage4.3.4.1 None
SRR6397733 Other lineage4.4.1.2 None
SRR6397815 Other lineage4.4.1.1 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR6785281 Other lineage4.2.1.1 None
ERR5087846 Other La1.8.1 None
ERR5087500 Other La1.8.1 None
ERR5087596 Other La1.8.1 None
SRR7131068 Other lineage4.8 None
SRR7131075 Other lineage4.8 None
SRR7131104 HR-TB lineage4.3.4.2 None
SRR7131145 Other lineage4.1.2.1 None
SRR7131149 Pre-XDR-TB lineage4.8 None
SRR7131182 Other lineage4.1.2.1 None
SRR7131147 Other lineage4.1.2.1 None
SRR7131161 Other lineage4.8 None
SRR7131195 Other lineage2.2.1 None
SRR7131230 HR-TB lineage4.3.4.2 None
SRR7131216 Other lineage4.1.2.1 None
SRR7131229 Other lineage4.1.2.1 None
SRR7131236 Other lineage4.3.4.2 None
SRR7131234 Other lineage4.9 None
SRR7131287 Other lineage2.2.1.1 None
SRR9971029 MDR-TB lineage2.2.2 None
SRR7131288 Other lineage4.6.2.2 None
SRR7517748 HR-TB lineage4.4.1.1 None
SRR8600288 Other La1.8.1 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9971070 MDR-TB lineage4.8.1 None
DRR184982 RR-TB lineage2.2.1 None
ERR019855 Other lineage3 None
ERR017781 Other lineage3 None
ERR3439502 Other La1.8.1 None
ERR036207 Other lineage4.9 None
ERR10762248 MDR-TB lineage4.2.1 None
ERR10796553 Other lineage4.9;lineage1.1 None
ERR10762495 MDR-TB lineage2.2.1 None
ERR10796560 MDR-TB lineage4.9;lineage4.1 None
ERR10796562 Other lineage4.3.4.1 None
ERR10796566 Other lineage4.9;lineage4.3.4 None
ERR10796568 Other lineage4.9 None
ERR10796572 Other lineage4.3.4.1 None
ERR10796571 Other lineage4.9 None
ERR10796577 RR-TB lineage4.9 None
ERR10796581 HR-TB lineage4.1.2 None
ERR10796589 Other lineage4.9 None
ERR10796591 MDR-TB lineage4.9 None
ERR10796592 Other lineage4 None
ERR10796593 RR-TB lineage4 None
ERR10796596 Other lineage4.9 None
ERR10796597 Other lineage4 None
ERR10796599 Other lineage4 None
ERR10796618 Other lineage4.3.4.1 None
ERR10796620 Other lineage4.1.1 None
ERR10796626 Other lineage4.1.2 None
ERR10796628 Other lineage4.3.3 None
ERR10796629 Other lineage4 None
ERR10796631 Other lineage4.3.4 None
ERR10796632 Other lineage4.3.3 None
ERR10796634 Other lineage4 None
ERR10796635 Other lineage4 None
ERR3324351 MDR-TB lineage4.1.4 None
ERR3324368 RR-TB lineage6.2.3;lineage1.1.2 None
ERR3439489 RR-TB La1.8.1 None
ERR10219876 Other lineage4.3.4.2 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR7801175 RR-TB lineage4.6.5 None
ERR4024667 Sensitive lineage4.3.3 None
ERR4769508 RR-TB lineage4.9 None
ERR4769530 RR-TB lineage4.9 None
ERR5917985 MDR-TB lineage2.2.1 None
ERR6197022 Other lineage4.9 None
ERR6197038 HR-TB lineage4.9 None
ERR3445487 Other La1.7.X-unk4 None
ERR4457826 Sensitive lineage4.3.3 None
ERR4769553 RR-TB lineage4.9 None
ERR4811035 Pre-XDR-TB lineage4.5;lineage2.2.1 None
ERR4811708 HR-TB lineage4 None
ERR6197030 Other lineage4.9 None
ERR6197042 RR-TB lineage4.9 None
ERR970449 RR-TB lineage4.1.1.3 None
ERR7801176 RR-TB lineage4.6.5 None
ERR9117699 Other lineage4.1.2.1 None
ERR9117805 Other lineage4.3.2 None
ERR8975044 Other lineage4.1.1.2 None
ERR9117695 Other lineage4.1.2.1 None
ERR9117781 Other lineage3.1.3 None
ERR9117812 Other lineage4.3.1.1 None
ERR9117827 Other lineage1.2.2.2 None
ERR9786164 RR-TB lineage4.1.1.3 None
SRR1173185 HR-TB lineage4.9 None
SRR1049676 MDR-TB lineage4.8;lineage4.3.3 None
SRR1049677 MDR-TB lineage4.8;lineage4.3.3 None
SRR1062920 MDR-TB lineage4.8;lineage4.3.3 None
ERR987707 MDR-TB lineage4.7 None
ERR9992879 XDR-TB lineage4.3.3 None
SRR10315465 MDR-TB lineage4.4.1.1 None
SRR10869071 MDR-TB lineage2.2.1 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR11342688 Other lineage4.2.2.2 None
SRR11349187 Pre-XDR-TB lineage4.8.1 None
SRR1140574 MDR-TB lineage4.8;lineage4.3.3 None
SRR1196478 MDR-TB lineage4.9 None
SRR1175473 Other lineage4.9 None
SRR1175474 HR-TB lineage4.9 None
SRR1175472 MDR-TB lineage4 None
SRR1175491 MDR-TB lineage4 None
SRR1184329 MDR-TB lineage4.9 None
SRR1173421 RR-TB lineage4.9 None
SRR1173450 RR-TB lineage4.9 None
SRR1173766 Sensitive lineage4.9 None
SRR11972188 MDR-TB lineage2.2.1 None
SRR15316595 RR-TB lineage4.4.2 None
SRR12199409 Other lineage1.2.2.2 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR13423546 Other lineage4.4.2 None
SRR13888750 Other La2 None
SRR11972417 MDR-TB lineage2.2.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR1792011 Other La1.8.1 None
SRR16370621 Sensitive lineage4.1.2.1 None
SRR15508556 Other lineage4.3.4.1 None
SRR1792012 Other La1.8.1 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR1792022 Other La1.8.1 None
SRR18002876 MDR-TB lineage2.2.2;lineage2.2.1 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18002948 Other lineage2.2 None
SRR18002901 MDR-TB lineage2.2.1 None
SRR18002909 MDR-TB lineage2.2.1 None
SRR18002933 Other lineage2.2.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR18002887 MDR-TB lineage2.2.1.1 None
SRR18002930 MDR-TB lineage2.2.1 None
SRR18002937 Other lineage2.2.1 None
SRR18002945 RR-TB lineage2.2.1 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18002963 Other lineage2.2.1 None
SRR18002956 HR-TB lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
SRR18002967 Pre-XDR-TB lineage2.2.1 None
SRR18002974 Pre-XDR-TB lineage2.2.1 None
SRR18002976 Other lineage2.2.1 None
SRR18002964 Other lineage2.2.1 None
SRR18002980 Other lineage2.2.1 None
SRR18002999 Pre-XDR-TB lineage2.2.1 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18003007 MDR-TB lineage4.5 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18003009 MDR-TB lineage2.2.1 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR18003023 Other lineage2.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR18003032 Other lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR18003049 Other lineage2.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR18911982 Other lineage4.4 None
SRR18572455 Sensitive lineage4.9 None
SRR19303805 Other lineage4.8 None
SRR18913779 Other lineage3 None
SRR19303798 Sensitive lineage4.4.1.1 None
SRR19226954 Sensitive lineage4.1.2.1 None
SRR19303773 Other lineage4.6.2.2 None
SRR19303815 Other lineage4.8 None
SRR19303818 Other lineage4.3.4.2 None
SRR19303820 RR-TB lineage4.8 None
SRR19303931 Other lineage2.2.1 None
SRR19303819 Other lineage4.6.2.2 None
SRR19303899 Other lineage3 None
SRR19303817 Other lineage2.2.1 None
SRR19303907 Other lineage4.8 None
SRR19304094 Other lineage6 None
SRR19304035 Other lineage4.1.2.1 None
SRR19303949 Other lineage4.3.3 None
SRR19317519 Sensitive lineage4.1.2.1 None
SRR19304104 Other lineage4.8 None
SRR19304115 Other lineage4.1.2.1 None
SRR21722120 Sensitive lineage4.1.2.1 None
SRR21469200 Other La1.7.1 None
SRR21658552 Other lineage6.1.1 None
SRR21469201 Other La1.7.1 None
SRR21469202 Other La1.7.1 None
SRR21686597 Sensitive lineage4.1.2.1 None
SRR22048474 RR-TB lineage4.8 None
SRR21727760 Other lineage2.2.1 None
ERR2229733 Other lineage4.8 dk
SAMEA3501065 RR-TB lineage4.8 None
SRR22424778 RR-TB lineage2.2.1.1 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
ERR2229811 Other lineage4.8 dk
SRR3601585 Pre-XDR-TB lineage2.2 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
SRR3619764 Pre-XDR-TB lineage2.2 None
SRR3675227 Other lineage4.9 None
ERR4814656 Other None
ERR1750941 Sensitive lineage4.8;lineage4.1.2 None
ERR171142 Other lineage4.9;lineage3.1.1 None
ERR1750889 Other lineage4.4.1.1 None
SRR3675265 Other lineage4 None
ERR2229540 Other lineage4.8 None
ERR4814930 Other lineage4.4.1.1 None
SRR3675509 Other lineage4.9 None
ERR2229810 Other lineage4.8 None
ERR2027252 Other lineage4.8;lineage4.2.1.1 None
SAMEA3501015 Other lineage4.8 None
ERR4816967 RR-TB lineage5 None
SRR3675513 Other lineage4.8 None
ERR4816969 Other lineage4.8 None
ERR2027257 Other lineage4.1.2.1 None
ERR2027209 MDR-TB lineage1.2.1.1 None
SRR3675547 Other lineage4.9 None
ERR2027255 HR-TB lineage4.4.1.1 None
ERR2229147 Other lineage4.8 None
SRR3675565 Other lineage3 None
ERR2027290 RR-TB lineage3.1 None
ERR2229366 Other lineage4.8 None
ERR4816458 Other lineage1.2.2.2 None
ERR2228810 RR-TB lineage4 None
ERR4817204 RR-TB lineage4.9 None
ERR4816755 Other lineage4.1.1.3 None
ERR2229801 Other lineage4 None
ERR2229804 Other lineage4 None
ERR2228900 RR-TB lineage4.8 None
ERR2228838 RR-TB lineage4.8 None
ERR2228890 Other lineage4 None
ERR2229505 Other lineage4.8 None
ERR2228899 RR-TB lineage4.8 None
ERR2513382 RR-TB lineage4.1.1.3 None
ERR2228910 Other lineage4.8 None
ERR4817915 RR-TB lineage4.9 None
ERR2512423 Other lineage4.1.1.3 None
SRR5007155 HR-TB lineage4.1.2.1 None
SAMEA3501063 RR-TB lineage4.8 None
SRR5007163 MDR-TB lineage4;lineage3 None
SRR5007161 RR-TB lineage4.1.1.3.1 None
ERR2510387 Pre-XDR-TB lineage4.9 None
ERR4818583 Other lineage4.3.3 None
SRR5007204 Other lineage4.1.2.1 None
SAMEA3501067 RR-TB lineage4.8 None
ERR4819910 Other lineage4.9 None
ERR2514430 Other lineage4.1.1.3.1;lineage3.1.2 None
ERR4820133 Sensitive lineage1.1.3.1 None
SRR6152980 HR-TB lineage4.8 ca
ERR4820060 Other lineage4.3.3 None
SAMEA3501070 RR-TB lineage4.8 None
SAMEA3501052 RR-TB lineage4.8 None
SRR6045496 Other lineage6.1.3 None
SRR6045445 Other lineage4.3.1.1 None
SAMEA3501046 RR-TB lineage4.8 None
SRR6045485 Other lineage4.9 None
SRR6045516 Other lineage3.1.1 None
SRR6045553 RR-TB lineage4.9 None
SRR6045537 Pre-XDR-TB lineage2.2.1 None
ERR4821747 MDR-TB lineage4.9;lineage4.2.1 None
SRR6046117 RR-TB lineage4.9 None
ERR4821288 Other lineage4.7 None
SRR6045621 Other lineage4.1.1.3 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR6045613 Other lineage3.1.3 None
SRR6046113 Other lineage4.1.1.3 None
SRR6045614 Other lineage4.8 None
SRR5818694 RR-TB lineage4.2.2.2;lineage3 None
SRR5818647 RR-TB lineage4.3.4.2.1 None
SRR5818690 Other lineage4.2.2.2 None
SRR6044769 Other lineage1.1.2 None
SRR6044841 Other lineage4.9 None
SRR6044787 Other lineage4.4 None
SRR6045909 Other lineage4.8 None
SRR6044904 Other lineage3 None
SRR6044873 Other lineage4.1.1.3.1 None
SRR6045928 Other lineage4.9 None
SRR6045158 Other lineage4.9 None
SRR6045002 MDR-TB lineage4.9 None
SRR6045952 HR-TB None
SRR6045017 Other lineage3.1.2.2 None
SRR6045138 Other lineage3.1.1 None
SRR6045944 Other lineage4.1.2.1 None
SRR6044983 Other lineage3.1.1 None
SRR6046159 Other lineage4.8.2 None
SRR6046020 Other lineage3 None
SRR6045267 RR-TB lineage4 None
SRR6045178 Other lineage3 None
SRR6045295 Other lineage4.7 None
SRR6046359 Other lineage4.7 None
SRR6045384 Other lineage4.1.2 None
SRR6046343 Other lineage2.2.1 None