EBG00000313339 - n.819C>T
Drug resistance types
11 Sensitive
38 RR-TB
6 HR-TB
36 MDR-TB
17 Pre-XDR-TB
1 XDR-TB
123 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 56 |
| lineage2.2.1 | 38 |
| lineage4.3.3 | 6 |
| lineage4.2.1.1 | 1 |
| La1.8.1 | 4 |
| lineage2.2.2 | 4 |
| lineage3 | 7 |
| lineage4.4.1.2 | 1 |
| lineage4.8 | 49 |
| lineage4.4.2 | 3 |
| lineage4.3.4.2 | 4 |
| lineage4 | 2 |
| lineage4.6.5 | 2 |
| lineage4.1.2.1 | 8 |
| lineage4.2.1 | 3 |
| lineage4.8.1 | 2 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage4.1.1.3 | 6 |
| lineage4.1.1.2 | 1 |
| lineage4.3;lineage4.9 | 1 |
| La2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage3.1.1 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage4.3.4.1 | 3 |
| La1.7.1 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.2 | 1 |
| La1.7.X-unk4 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.1.1 | 3 |
| lineage1.2.1.1 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.1.3 | 1 |
| lineage4.2.2 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 232 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1183531 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1209015 | Sensitive | lineage4.9 | None | SRR1202713 | Sensitive | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR1792012 | Other | La1.8.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR017781 | Other | lineage3 | None | SRR6397733 | Other | lineage4.4.1.2 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR10796635 | Other | lineage4.8 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | ERR978756 | Other | lineage4.8 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR3675265 | Other | lineage4 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6045603 | Other | lineage4.1.1.3 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR978735 | Other | lineage4.8 | None | ERR978762 | Other | lineage4.8 | None | SRR18002976 | Other | lineage2.2.1 | None | ERR10796571 | Other | lineage4.9 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR978748 | Other | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR18002963 | Other | lineage2.2.1 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6152980 | HR-TB | lineage4.8 | ca | SRR1182880 | Other | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR1175474 | Other | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | SRR11342646 | HR-TB | lineage3 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796560 | Other | lineage4.9 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | ERR2228899 | Other | lineage4.8 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | ERR2228900 | Other | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1208281 | Sensitive | lineage4.9 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR1180024 | Other | lineage4.9 | None | SRR1208759 | Sensitive | lineage4.9 | None | SRR1183339 | Other | lineage4.9 | None | SRR1183686 | Sensitive | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | ERR10796553 | Other | lineage4.9 | None | SRR3675389 | Other | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR1208611 | Other | lineage4.9 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SRR1208476 | Other | lineage4.9 | None | SRR1202708 | Other | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | SRR1183152 | Other | lineage4.9 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR21469202 | Other | La1.7.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | ERR978761 | Other | lineage4.8 | None | SRR1180831 | Other | lineage4.9 | None | SRR6046729 | Other | lineage3 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR1792022 | Other | La1.8.1 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR1183438 | Other | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR019855 | Other | lineage3 | None | SRR1208721 | Other | lineage4.9 | None | SRR1182958 | Other | lineage4.9 | None | ERR2229733 | Other | lineage4.8 | dk | ERR5162090 | RR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046117 | Other | lineage4.9 | None | SRR1202728 | Other | lineage4.9 | None | ERR2229811 | Other | lineage4.8 | dk | ERR978757 | RR-TB | lineage4.8 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR5087596 | Other | La1.8.1 | None | SRR1180686 | Other | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR1202702 | Other | lineage4.9 | None | ERR978727 | Other | lineage4.8 | None | SRR21469200 | Other | La1.7.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR1208553 | Other | lineage4.9 | None | SRR1182900 | Sensitive | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR1181264 | Sensitive | lineage4.9 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR867572 | Other | lineage4.9 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR1208756 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1181299 | Other | lineage4.9 | None | ERR2229366 | Other | lineage4.8 | None | SRR19303907 | Other | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4.3.3 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR978752 | Other | lineage4.8 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR1180047 | Other | lineage4.9 | None | SRR1180569 | Sensitive | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1208536 | Other | lineage4.9 | None | SRR1202404 | Other | lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR6045384 | Other | lineage4.1.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR1792011 | Other | La1.8.1 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR867569 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR1208891 | Other | lineage4.9 | None | SRR21722120 | Sensitive | lineage4.1.2.1 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR1208277 | Other | lineage4.9 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR978747 | Other | lineage4.8 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR11342669 | Other | lineage4.8 | None | SRR7131229 | Other | lineage4.1.2.1 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR1202656 | Sensitive | lineage4.9 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR1209022 | Other | lineage4.9 | None | SRR7131161 | Other | lineage4.8 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR1183684 | Other | lineage4.9 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR4811708 | HR-TB | lineage4 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR19304104 | Other | lineage4.8 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | SRR7069835 | Other | lineage2.2.1 | None | ERR10796591 | Other | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | ERR867544 | Other | lineage4.9 | None | SRR7069074 | Other | lineage3 | None | DRR184982 | Other | lineage2.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None |
|---|
