lineage | Count |
---|---|
lineage1.1.1.1 | 1 |
lineage3 | 28 |
lineage4.6.2.2 | 5 |
lineage4.1.2.1 | 32 |
lineage1.2.2.2 | 5 |
lineage4.8 | 26 |
lineage3.1.3 | 2 |
lineage4.3.2 | 2 |
lineage4.2.1 | 3 |
lineage4.4.1.1 | 10 |
lineage2.2.1 | 64 |
lineage4.3.4.2.1 | 5 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4 | 20 |
La1.6 | 1 |
lineage4.1.1 | 5 |
lineage4.1.2 | 6 |
lineage4.2.2.2 | 3 |
lineage2.2.2;lineage2.2.1 | 1 |
6 | |
lineage4.9 | 43 |
lineage4.3.4 | 2 |
lineage4.6.1.1 | 3 |
La1.8.2 | 1 |
lineage2.2.2 | 7 |
lineage4.8.1 | 3 |
lineage4.3.4.1 | 5 |
lineage2.2.1.1 | 3 |
lineage2.2 | 1 |
lineage4.2.2 | 1 |
lineage4.4.2 | 2 |
lineage4.5 | 1 |
lineage4.1.1.3.1 | 4 |
lineage4.3.4.2 | 7 |
lineage4.3.3 | 11 |
lineage6 | 2 |
lineage6.1.1 | 1 |
lineage1.2.1.2 | 2 |
lineage4.1.1.3 | 5 |
lineage4.9;lineage3.1.1 | 1 |
lineage4.3.2.1 | 2 |
lineage1.2.1.1 | 1 |
lineage3.1 | 2 |
lineage4.1.3 | 1 |
lineage4.6.1.2 | 1 |
lineage4.7 | 5 |
lineage4.6 | 1 |
lineage3.1.2.1 | 2 |
lineage4;lineage3 | 1 |
lineage1.1.3 | 1 |
lineage4.3.1.1 | 3 |
lineage6.1.3 | 1 |
lineage4.8.2 | 3 |
lineage4.2.2.2;lineage3 | 1 |
lineage1.1.2 | 6 |
lineage4.4 | 1 |
lineage3.1.1 | 3 |
lineage3.1.2.2 | 3 |
lineage1.1.3.3 | 2 |
lineage4.9;lineage3 | 1 |
lineage4.6.5 | 1 |
lineage4.9;lineage1.1 | 1 |
lineage4.9;lineage4.1 | 1 |
lineage4.9;lineage4.3.4 | 1 |
spoligotype | Count |
---|---|
None | 376 |
ID | Drug resistance | Lineage | Country iso2 | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR9117728 | Other | lineage3 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117695 | Other | lineage4.1.2.1 | None | ERR9117699 | Other | lineage4.1.2.1 | None | ERR9117732 | Other | lineage1.2.2.2 | None | SRR10315476 | MDR-TB | lineage4.8 | None | ERR9117759 | Other | lineage3 | None | ERR9117781 | Other | lineage3.1.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR1002691 | HR-TB | lineage4.2.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315709 | MDR-TB | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342643 | MDR-TB | lineage4.1.1 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172282 | Other | lineage4.9 | None | SRR1173113 | RR-TB | lineage4.3.4 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1173834 | Other | lineage4.6.1.1 | None | SRR1183034 | Sensitive | lineage4.9 | None | SRR15296979 | Other | La1.8.2 | None | SRR16058205 | HR-TB | lineage2.2.1 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1173281 | RR-TB | lineage3 | None | SRR14088360 | Sensitive | lineage3 | None | SRR16058218 | MDR-TB | lineage4.3.4.1 | None | SRR16156751 | RR-TB | lineage4.9 | None | SRR16370621 | Sensitive | lineage4.1.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002938 | Sensitive | lineage2.2.2 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002950 | MDR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18213684 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR18572456 | Sensitive | lineage4.9 | None | SRR18714851 | Sensitive | lineage4 | None | SRR18913779 | Other | lineage3 | None | SRR19303805 | Other | lineage4.8 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR19303949 | Other | lineage4.3.3 | None | SRR19304035 | Other | lineage4.1.2.1 | None | SRR19304094 | Other | lineage6 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR21658552 | Other | lineage6.1.1 | None | SRR22048474 | RR-TB | lineage4.8 | None | SRR19303784 | Other | lineage4.2.1 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303899 | Other | lineage3 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR19317519 | Sensitive | lineage4.1.2.1 | None | SRR21277150 | Sensitive | lineage2.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR21727888 | Other | lineage1.2.1.2 | None | ERR4815787 | Other | lineage2.2.1 | None | ERR4815299 | Other | lineage4.8 | gb | ERR4814362 | Other | lineage4.8 | None | SRR3675496 | Other | lineage4.1.1.3 | gb | ERR1665405 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675227 | Other | lineage4.9 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675265 | Other | lineage4 | None | SRR3675288 | Other | lineage3 | None | ERR4814938 | Other | lineage4.3.2.1 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4816928 | HR-TB | lineage1.2.2.2 | None | SRR3675509 | Other | lineage4.9 | None | ERR4815919 | Other | lineage4.8 | None | SRR3675513 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027256 | Other | lineage4.1.2 | None | ERR4817055 | Other | lineage4.1.2.1 | None | SRR3675565 | Other | lineage3 | None | ERR2229148 | Other | lineage4.8 | dk | SRR3675533 | Sensitive | lineage3 | None | ERR2027232 | Other | lineage4.3.4.2 | None | SRR3675547 | Other | lineage4.9 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR4816458 | Other | lineage1.2.2.2 | None | ERR4816464 | Other | lineage3 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR2229760 | Other | lineage4.8 | dk | ERR4817780 | Other | lineage4.7 | None | ERR2229325 | Other | lineage4.8 | dk | ERR4816699 | Other | lineage4.6 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817717 | Sensitive | lineage4.3.3 | gb | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817853 | Other | lineage4.8.1 | None | ERR2503364 | Sensitive | lineage4.8 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR4818173 | Other | lineage2.2.1 | None | ERR4817964 | RR-TB | lineage4.1.2.1 | gb | ERR4818904 | Other | lineage4.8 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818574 | Other | lineage6 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007199 | Other | lineage4.1.2.1 | None | ERR4819093 | Other | lineage4.3.3 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819307 | RR-TB | lineage4 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4819525 | Other | lineage3 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4820815 | Other | lineage1.1.3 | gb | ERR4819734 | RR-TB | lineage3 | gb | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819720 | Other | lineage3.1.2.1 | gb | ERR4820030 | Other | lineage4.9 | None | ERR4820060 | Other | lineage4.3.3 | None | SRR6045445 | Other | lineage4.3.1.1 | None | SRR6046087 | Other | None | SRR6045432 | Other | lineage3 | gb | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6046113 | Other | lineage4.1.1.3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045705 | Other | lineage4.9 | None | ERR4822282 | Sensitive | lineage4.8.2 | gb | ERR4821746 | Other | lineage4.4.1.1 | gb | SRR6045778 | Other | lineage3.1 | None | SRR6045726 | Other | lineage3 | None | SRR6046210 | Other | lineage4 | None | SRR6045743 | Other | lineage3 | None | SRR6044838 | Other | lineage4.9 | None | SRR5818690 | Other | lineage4.2.2.2 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR6044787 | Other | lineage4.4 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045022 | Other | lineage3.1.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044993 | Other | lineage3 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044916 | Other | lineage4.1.1 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6045952 | HR-TB | None | SRR6045958 | Other | lineage3 | gb | SRR6046016 | Other | lineage4.3.1.1 | gb | SRR6046159 | Other | lineage4.8.2 | None | SRR6045986 | Other | lineage3 | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045999 | Sensitive | lineage4.8.2 | gb | SRR6045178 | Other | lineage3 | None | SRR6046020 | Other | lineage3 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045243 | Sensitive | lineage4.1.1 | gb | SRR6045261 | Other | lineage1.1.2 | gb | SRR6045365 | Other | lineage3 | gb | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6045295 | Other | lineage4.7 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046359 | Other | lineage4.7 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6046239 | Other | lineage4.9;lineage3 | None | ERR4829247 | MDR-TB | lineage4.3.3 | None | ERR2851354 | RR-TB | lineage4.9 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046398 | Other | lineage4.1.1.3.1 | gb | SRR6046440 | Other | lineage3.1.2.2 | None | ERR4828803 | Sensitive | lineage4.1.2.1 | None | SRR6046482 | HR-TB | None | SRR6046442 | Other | lineage3 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046497 | Other | lineage4.9 | None | SRR6046729 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6046517 | Other | lineage4.8 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046802 | Other | lineage4 | None | SRR6046790 | Other | lineage4.7 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046739 | Other | lineage1.1.2 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046815 | Other | lineage3 | None | SRR6046860 | Other | lineage4.4.1.1 | None | SRR6367397 | Other | lineage4.1.2.1 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | SRR6397975 | Other | lineage4.1.2.1 | ca | SRR6257067 | HR-TB | lineage4.2.1 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR4831516 | Sensitive | lineage3 | pk | ERR502479 | RR-TB | lineage4.9 | None | SRR7131032 | Other | lineage2.2.1 | None | ERR552175 | Sensitive | lineage4 | de | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6831930 | Sensitive | lineage4 | None | SAMN02567682 | Other | lineage4.6.1.1 | ug | SRR7131026 | Other | lineage2.2.1 | None | SRR7131068 | Other | lineage4.8 | None | SRR7131146 | Sensitive | lineage4.6.2.2 | None | SRR7131104 | HR-TB | lineage4.3.4.2 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131098 | MDR-TB | lineage4.3.3 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131196 | Other | lineage4.8 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR7131234 | Other | lineage4.9 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7131275 | Other | lineage4.1.2.1 | None | DRR184932 | Other | lineage2.2.1 | None | SRR7131297 | Other | lineage1.2.1.2 | None | SRR9971372 | MDR-TB | lineage4.1.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971070 | MDR-TB | lineage4.8.1 | None | SRR1735641 | Sensitive | lineage2.2.1 | gb | SRR9217359 | MDR-TB | lineage1.1.2 | None | SRR7131288 | Other | lineage4.6.2.2 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796588 | Other | lineage4 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796615 | Other | lineage4 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796599 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796634 | Other | lineage4 | None | ERR10796629 | Other | lineage4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR10796635 | Other | lineage4 | None | ERR1193816 | Sensitive | lineage4 | ua | ERR3994126 | Other | lineage4.9 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR3994105 | Sensitive | lineage4.1.2.1 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR6197022 | Other | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR6197030 | Other | lineage4.9 | None | ERR6197036 | Other | lineage4 | None | ERR6197042 | RR-TB | lineage4.9 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR6197038 | HR-TB | lineage4.9 | None |
---|