EBG00000313339 - n.2336C>T
Drug resistance types
30 Sensitive
37 RR-TB
6 HR-TB
40 MDR-TB
19 Pre-XDR-TB
1 XDR-TB
152 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 80 |
| lineage4.8 | 53 |
| lineage4.4.1.2 | 1 |
| lineage4.1.1.1 | 5 |
| lineage2.2.1 | 50 |
| lineage4.8.1 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.4.2 | 2 |
| lineage2.2.2 | 7 |
| lineage4.1.2.1 | 11 |
| lineage4.3.3 | 8 |
| lineage4.5 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.2.2.2 | 3 |
| lineage4.4 | 1 |
| lineage3 | 9 |
| lineage6.1.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.1.1.3 | 5 |
| lineage4.4.1.1 | 3 |
| La1.8.1 | 2 |
| lineage1.1.1 | 2 |
| La1.7.X-unk4 | 1 |
| 1 | |
| lineage1.2.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.2.2 | 1 |
| lineage1.2.1.2 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage3.1.1 | 1 |
| lineage4.6.5 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage3.1.3 | 1 |
| lineage4.3.4.2 | 2 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4 | 1 |
| lineage4.2.1 | 3 |
| lineage4.1.3 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.7 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 285 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR363456 | Sensitive | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR349300 | Other | lineage4.9 | None | SRR5818414 | Other | lineage4.9 | None | SRR6397733 | Other | lineage4.4.1.2 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | ERR363449 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR373945 | Other | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR978694 | Other | lineage4.8 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR978756 | Other | lineage4.8 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR363421 | Other | lineage4.9 | None | SRR21240055 | Other | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR978747 | Other | lineage4.8 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR11342680 | Other | lineage4.8 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR373946 | Other | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR978748 | Other | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR18002963 | Other | lineage2.2.1 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR5818386 | Other | lineage4.9 | None | SRR18002956 | Other | lineage2.2.1 | None | ERR978727 | Other | lineage4.8 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | ERR349299 | Other | lineage4.9 | None | SRR11342688 | Other | lineage4.2.2.2 | None | ERR349264 | Other | lineage4.9 | None | ERR867572 | Other | lineage4.9 | None | SAMEA3450033 | Other | lineage4.8 | None | SRR6044787 | Sensitive | lineage4.4 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR6046020 | Other | lineage3 | None | ERR3014599 | Pre-XDR-TB | lineage4.1.2.1 | tn | SRR6045496 | Other | lineage6.1.3 | None | SRR5818464 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | ERR1163055 | MDR-TB | lineage4.8 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR7236399 | Other | La1.8.1 | None | SRR1173421 | Other | lineage4.9 | None | SRR3675509 | Other | lineage4.9 | None | ERR2228900 | Other | lineage4.8 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR363453 | Other | lineage4.9 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | ERR363500 | Other | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR5007165 | Other | lineage3 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR7070144 | Other | lineage4.8 | None | ERR10796632 | Other | lineage4.3.3 | None | SRR12708416 | Sensitive | None | ERR369162 | Other | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR5818422 | Other | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR11342669 | Other | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | SRR6045464 | Other | lineage4.1.1.3 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | SRR7068885 | Other | lineage3 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | ERR369163 | Other | lineage4.9 | None | ERR8975202 | Other | lineage1.1.3.2 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR867573 | Other | lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR349265 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR19304104 | Other | lineage4.8 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR363498 | Other | lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR11342646 | HR-TB | lineage3 | None | SRR6397815 | Other | lineage4.4.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR5818398 | Other | lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR10796560 | Other | lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR7069946 | Other | lineage4.8 | None | ERR9117759 | Other | lineage3 | None | ERR363490 | Other | lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR7236330 | Other | La1.8.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR978752 | Other | lineage4.8 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | SRR18003023 | Other | lineage2.2.1 | None | ERR911929 | Other | lineage4.8 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR560438 | Other | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR7068912 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045384 | Other | lineage4.1.2.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | ERR363479 | Other | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR349266 | Other | lineage4.9 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR19303899 | Other | lineage3 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR363446 | Other | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR2600562 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | ERR363499 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR18003038 | Other | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR7131161 | Other | lineage4.8 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR6152899 | MDR-TB | lineage2.2.2 | ca | SRR6045909 | Other | lineage4.8.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR978735 | Other | lineage4.8 | None | ERR978762 | Other | lineage4.8 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | ERR2229198 | Sensitive | lineage4.8 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR11662694 | Other | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR560439 | Other | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046177 | Other | lineage3.1.2 | None | SRR3675527 | Other | lineage4.9 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR3675318 | Other | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR978751 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4816417 | Other | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR19303907 | Other | lineage4.8 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR4812155 | Other | lineage4.9 | None | SRR6045986 | Other | lineage3 | None | ERR363445 | Other | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR363502 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR5818459 | Other | lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | SRR3675389 | Other | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | DRR034348 | Other | lineage2.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | ERR978761 | Other | lineage4.8 | None | SRR1173833 | Other | lineage4.9 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR867569 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR18002987 | Other | lineage2.2.1 | None | ERR369159 | Other | lineage4.9 | None | SRR6046442 | Other | lineage3 | None |
|---|
