Rv3596c - c.759A>C


Drug resistance types
23 Sensitive 21 RR-TB 46 HR-TB 53 MDR-TB 10 Pre-XDR-TB 2 XDR-TB 182 Other
lineage Counts
lineage Count
La3;lineage4.9 9
lineage4.7 1
lineage3 7
lineage4.8 9
lineage4.6.3;lineage4.9 1
lineage4.9 89
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.7;lineage4.9;lineage7 3
lineage4.9;lineage6.3 7
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage3.1.2.1;lineage3.1.2.2 1
lineage2.1;lineage4.9 14
lineage4 3
lineage2.2.1;lineage6.3 1
lineage2.1;lineage4.9;lineage6.3 8
La1.7;M.canetti;lineage4.9 2
lineage2.2.1 23
La2 1
lineage3.1 1
lineage4.9;lineage9 2
lineage2.1;lineage4.3.2;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.1.2.1 13
lineage4.3.2;lineage4.9 1
lineage4.3.2 2
La1.3 1
La1.7;lineage4.9 3
La2;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage1.1.1 2
lineage4.1.1.1 5
lineage4.3.4.2.1 4
La3;lineage2.2.1 1
lineage6.1.3 1
La1.7;lineage3;lineage4.9;lineage7 1
La1.7;lineage4.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
25
lineage2.2 2
lineage2.2.2 3
lineage4.4.2 1
La1.7.X-unk4;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 2
lineage4.1.1.3 4
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage2.1;lineage6.3 2
La3;lineage1.1.2 1
lineage1.1;lineage4 1
lineage4.3.3;lineage4.8 3
M.canetti;lineage4.9 1
lineage4.4.1.1 2
lineage4.5 1
lineage4.6.1.2 4
lineage2.1;lineage4.1.4;lineage4.9 1
lineage3.1.1 1
lineage4.9;lineage7 1
La2;lineage4.9;lineage9 1
lineage4.3.3 3
La3 2
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.8.1 1
La3;lineage2.1;lineage4.9 2
lineage2.1 5
lineage4.6.3;lineage4.9;lineage6.3 1
La1.2.BCG 1
lineage4.6.2.2 1
La3;lineage4 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage4.8 1
lineage6.3.1 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
La1.8.1 1
La3;M.canetti;lineage4.9 1
lineage4.2.2.2 2
lineage4.3 1
lineage2.2;lineage4 1
lineage2.2.1;lineage3 1
lineage4.4 1
lineage4.1.3 2
lineage3.1.2.2 1
lineage4.2.1 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage4.2;lineage4.6.3;lineage4.9 1
La3;lineage2 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.3.4.1 1
lineage4.3.2.1 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.1.1.3.1 1
lineage4.3.4.2 1
spoligotype Counts
spoligotype Count
None 337
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR26399973 Other La3;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR4815556 RR-TB lineage3 None
ERR4817667 HR-TB lineage4.8 None
ERR3283031 Other La3;lineage4.9 None
SRR26159047 RR-TB lineage4.6.3;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR987729 MDR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
SRR10315751 MDR-TB lineage4.8 None
ERR4769521 RR-TB lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4798823 HR-TB lineage4 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR1173118 Other lineage2.2.1 None
SRR6789621 Other lineage4.9 None
SRR13888750 Other La2 None
SRR16156188 Sensitive lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
ERR9119733 MDR-TB lineage2.2.1 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR553132 MDR-TB lineage4.1.2.1 None
SRR7645906 Other lineage2.2.1 None
ERR4814639 HR-TB lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
ERR1213930 Other lineage4.3.2 pe
ERR9117805 Other lineage4.3.2 None
ERR3797070 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4769436 Other La1.3 None
SRR5341267 Pre-XDR-TB lineage3 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR323039 MDR-TB La2;lineage4.9 None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR3283014 Other La3;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR3797064 Other La3;lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR4819781 Other lineage2.2.1 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR3797047 MDR-TB lineage4.9 None
ERR4817554 Other lineage1.1.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR3797086 Sensitive lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR4797588 MDR-TB lineage3 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR8758877 MDR-TB lineage4.1.1.1 None
SRR11972367 Sensitive lineage2.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
ERR9787165 Other lineage6.1.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR23961559 Other La1.7;lineage4.2 None
SRR17658565 Pre-XDR-TB lineage3 None
SRR6046485 Other lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR6044855 Sensitive lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR9786617 Other lineage4.1.1.1 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
SRR6789626 Other None
SRR7535086 Other None
SRR18213713 HR-TB None
ERR987722 MDR-TB None
SRR22424765 HR-TB lineage4.8 None
SRR1196583 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR4816852 Other lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
SRR6044952 Other lineage4.9 None
ERR4808964 RR-TB lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR3797087 Sensitive lineage4.9 None
ERR4800341 HR-TB lineage3 None
SRR1181403 Other lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR18002891 MDR-TB lineage2.2.1 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
SRR12062493 Pre-XDR-TB lineage4.4.2 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR16156697 RR-TB lineage2.2.1 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR18003019 Other lineage2.2.1 None
ERR11465025 Other lineage4.1.1.3 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR6982239 Sensitive lineage4.1.1.3 None
ERR926165 Other lineage4.9 None
ERR176549 Other lineage4.3.4.2.1 None
SRR1196677 Other lineage2.2 None
ERR9786569 Other lineage4.8 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR1173633 Other lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR4819322 Other lineage1.1;lineage4 None
SRR3675214 Other lineage4.9 None
ERR3283044 Other lineage4 None
SRR6045555 Other lineage4.9 None
SRR1049676 MDR-TB lineage4.3.3;lineage4.8 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR9119669 MDR-TB lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR9786627 Other lineage4.1.2.1 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR1173778 Other lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR1062920 MDR-TB lineage4.3.3;lineage4.8 None
SRR26159043 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4816548 HR-TB lineage4.5 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
ERR3797063 Other La3;lineage4.9 None
SRR1049677 MDR-TB lineage4.3.3;lineage4.8 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR6046521 Other lineage4.4.1.1 None
SRR1196474 Other lineage3.1.1 None
ERR926163 Other lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR1172951 Other lineage4.9 None
SRR1196566 Other lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR736831 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11049020 Other lineage4.8 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR926164 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR3675457 Other lineage4.9 None
SRR18003024 RR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
SRR3416776 Other lineage2.1 None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR9971122 MDR-TB lineage4.8 None
ERR4815752 Other lineage4.9 None
SRR1172817 Other La3 None
ERR11465024 Other lineage4.1.1.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4817915 Other lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4818110 Sensitive lineage4.9 None
ERR3283006 RR-TB lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR9786645 Other lineage4.6.2.2 None
SRR25827507 MDR-TB lineage4.1.1.1 None
ERR9786682 Other lineage4.1.2.1 None
ERR3283028 Other La3;lineage4 None
SRR1173788 Sensitive lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR7496509 Other None
ERR9786671 Other None
ERR4817069 RR-TB None
SRR1184372 MDR-TB None
SRR28044634 Other lineage3 None
ERR2514692 Other None
SRR1172857 Other None
ERR4407463 HR-TB None
SRR28119805 Other lineage4.9 None
SRR1196768 MDR-TB None
ERR4817060 Other None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR5341373 Other lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
ERR2514327 HR-TB lineage4.8 None
ERR9787139 Other lineage6.3.1 None
SRR6045010 Sensitive lineage4.9 None
SRR13423649 Other lineage2.2.1 None
SRR1180440 Other lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3797079 Sensitive lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR11462861 Other La1.8.1 None
ERR4188247 HR-TB lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
SRR1169194 Other lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR4798504 RR-TB lineage3 None
ERR3797048 Other La3;lineage4.9 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR702406 Other lineage2.1 None
ERR926156 Other lineage4.9 None
ERR4816322 Other lineage4.9 None
ERR4819314 HR-TB lineage1.1.1 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
ERR3275941 RR-TB lineage4.3 nl
SRR16156832 RR-TB lineage2.2;lineage4 None
SRR1180226 HR-TB lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1184312 Other lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR16627752 RR-TB lineage4.4 None
ERR502912 Other lineage2.2.1 None
ERR3804169 HR-TB lineage4.1.3 None
ERR2513470 Other lineage4.2.2.2 None
SRR6045219 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR7645901 MDR-TB lineage2.2.1 None
ERR926160 Other lineage4.9 None
SRR1173384 Other lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR3675248 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR867570 RR-TB lineage4.9 None
SRR5007204 Other lineage4.1.2.1 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR176793 Other lineage4.1.1.1 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR1173153 Other lineage4.9 None
SRR3675221 Other lineage4.9 None
ERR867541 MDR-TB lineage4.2.1 None
SRR1184294 Other lineage4.9 None
ERR323037 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR21732980 Other lineage4.3.3 None
ERR3797062 RR-TB lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
SRR5341293 Sensitive lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR20969677 HR-TB La3;lineage2 None
ERR2432997 Other lineage4.8 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR2229542 Other lineage4.8 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR12416840 MDR-TB lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9992879 XDR-TB lineage4.3.3 None
ERR9786601 Other lineage4.1.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR1180446 Other lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR5987263 MDR-TB lineage2.2.1 None
ERR1034634 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR926155 Other lineage4.9 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR7131023 Other lineage4.1.2.1 None
SRR6044780 Sensitive lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7070157 Other lineage4.1.1.3.1 None
ERR971389 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675572 Other None
SRR1175074 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR4815604 Other None
ERR9117709 Other None
ERR234659 HR-TB None
SRR25827682 Other None
SRR7496517 Other None
ERR9787197 Other None
SRR3675236 Other None
ERR4816999 Other None
SRR28119777 Other lineage4.9 None
SRR6045795 Other lineage2.2.1 None
ERR6866807 RR-TB lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR11342673 RR-TB lineage4.3.4.2 None
SRR3675549 Other lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1710057 Other lineage2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR1181256 Other lineage4.9 None
SRR1049582 MDR-TB lineage4.6.1.2 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
ERR3797065 RR-TB lineage4.9 None