EBG00000313339 - n.2095C>T
Drug resistance types
14 Sensitive
38 RR-TB
20 HR-TB
31 MDR-TB
21 Pre-XDR-TB
0 XDR-TB
226 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 32 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1 | 58 |
| lineage1.2.1.2.1 | 3 |
| lineage2.2.2;lineage2.2.1 | 1 |
| La1.7.1 | 1 |
| lineage2.2.2 | 4 |
| lineage2.2.1.1 | 5 |
| lineage2.2 | 1 |
| lineage4.2.2 | 1 |
| lineage4.4.2 | 3 |
| lineage4.5 | 5 |
| lineage4.8 | 27 |
| lineage3 | 33 |
| lineage4.3.3 | 9 |
| lineage4.3.4.2 | 7 |
| lineage4.6.2.2 | 6 |
| lineage4.1.2.1 | 23 |
| lineage4.4.1.2 | 2 |
| lineage4.4.1.1 | 7 |
| lineage6 | 2 |
| La1.2 | 1 |
| lineage4.1.1.3 | 9 |
| lineage4.1.1 | 6 |
| lineage1.1.2 | 3 |
| lineage4.1.2 | 5 |
| lineage4.9;lineage3.1.1 | 1 |
| 6 | |
| lineage4 | 15 |
| lineage1.2.1.1 | 1 |
| La1.2.BCG | 1 |
| lineage6.2.3 | 1 |
| lineage3.1 | 2 |
| lineage4.2.2.1 | 1 |
| lineage4.7 | 4 |
| lineage3.1.2.1 | 3 |
| lineage3.1.1 | 5 |
| lineage4.2.1.1 | 3 |
| lineage4.3.2.1 | 1 |
| lineage4.1.1.3.1 | 5 |
| lineage4.3.2 | 4 |
| lineage4;lineage3 | 1 |
| lineage1.2.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage3.1.3 | 1 |
| lineage4.8.2 | 2 |
| lineage4.2.2.2 | 3 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4 | 1 |
| lineage4.8;lineage3 | 1 |
| lineage3.1.2.2 | 3 |
| lineage4.9;lineage3 | 1 |
| lineage4.3.1.1 | 2 |
| lineage4.1.4 | 1 |
| lineage1.2.2.2 | 3 |
| lineage4.2.1 | 2 |
| lineage4.6.5 | 1 |
| lineage4.3.4.1 | 4 |
| lineage4.9;lineage1.1 | 1 |
| La1.8.1 | 2 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.3 | 3 |
| lineage4.3.4 | 1 |
| lineage4.5;lineage3.1.2 | 1 |
| lineage4.6 | 1 |
| lineage4.4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 350 |
Geographic prevalence
Country level data for this variant is available for 54 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1735596 | RR-TB | lineage4.9 | None | SRR12199461 | Sensitive | lineage1.1.3.1 | None | SRR16058726 | Other | lineage2.2.1 | None | SRR12006699 | Sensitive | lineage1.2.1.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1792232 | Other | La1.7.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002900 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002965 | Sensitive | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR19303805 | Other | lineage4.8 | None | SRR18913779 | Other | lineage3 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303899 | Other | lineage3 | None | SRR19303907 | Other | lineage4.8 | None | SRR19304035 | Other | lineage4.1.2.1 | None | SRR19303949 | Other | lineage4.3.3 | None | SRR19303960 | Sensitive | lineage4.4.1.2 | None | SRR19303985 | Other | lineage4.8 | None | SRR19304029 | Other | lineage4.8 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR19304094 | Other | lineage6 | None | SRR19304096 | Other | La1.2 | None | SRR19304104 | Other | lineage4.8 | None | SRR3675496 | Other | lineage4.1.1.3 | gb | SRR21727760 | Other | lineage2.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815204 | Other | lineage2.2.1.1 | gb | ERR4815640 | Other | lineage3 | gb | SRR22048474 | RR-TB | lineage4.8 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR3675474 | Other | lineage4.1.1 | None | ERR4815680 | Other | lineage1.1.2 | gb | ERR4814496 | RR-TB | lineage4.1.2 | None | ERR4815425 | Other | lineage4.5 | gb | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675282 | Other | None | ERR4814881 | Other | lineage2.2.1 | gb | SRR3675265 | Other | lineage4 | None | ERR4815521 | Other | lineage4.8 | gb | ERR4815065 | Other | lineage4.1.2.1 | gb | SRR3675509 | Other | lineage4.9 | None | ERR4815917 | Other | lineage2.2.1 | gb | SRR3675513 | Other | lineage4.8 | None | ERR4816009 | Other | lineage1.1.2 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4817342 | Other | lineage4.1.1 | None | ERR4816090 | Other | La1.2.BCG | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816403 | Other | lineage6.2.3 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816300 | Other | lineage4.1.2.1 | None | SRR3675565 | Other | lineage3 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR4817047 | Other | lineage4.2.2.1 | gb | ERR2229760 | Other | lineage4.8 | dk | ERR4816437 | Other | lineage3 | gb | ERR4818663 | Other | lineage3 | None | ERR4816604 | RR-TB | lineage4.1.2 | None | ERR4817189 | Other | lineage4.7 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4817131 | Pre-XDR-TB | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4817730 | Other | lineage4.2.1.1 | gb | ERR2513056 | HR-TB | lineage4.1.2.1 | gb | ERR2512986 | Other | lineage3 | None | ERR4817907 | Other | lineage3 | gb | ERR2513392 | Other | lineage4.3.2.1 | gb | ERR4818753 | Other | lineage3 | gb | ERR2513401 | HR-TB | lineage3 | None | ERR4818003 | Other | lineage1.2.1.2.1 | gb | ERR2510796 | HR-TB | lineage4.3.4.2 | it | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR2515055 | Other | lineage3 | None | ERR4819041 | Sensitive | lineage4.3.3 | gb | ERR4818065 | Other | lineage4.1.2.1 | None | ERR4818825 | HR-TB | lineage4.1.2.1 | None | ERR2512529 | Sensitive | lineage4.1.1.3.1 | gb | ERR2509885 | RR-TB | lineage3 | None | ERR2512716 | HR-TB | lineage4.6.2.2 | gb | ERR4818498 | Other | lineage3.1.2.1 | gb | ERR4818897 | Other | lineage4.1.2.1 | gb | ERR4818407 | Other | lineage4.3.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818574 | Other | lineage6 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | ERR4819080 | Other | lineage4.1.2.1 | gb | ERR2512884 | Other | lineage4.6.2.2 | gb | ERR4817555 | RR-TB | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR2513619 | Other | lineage4.8 | gb | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4819332 | Other | lineage3 | gb | ERR4819093 | Other | lineage4.3.3 | None | ERR4819267 | Sensitive | lineage3.1.1 | None | ERR4820275 | HR-TB | lineage4.4.1.2 | gb | ERR2514173 | Other | lineage4.5 | gb | ERR4819630 | Other | lineage4.8 | gb | ERR4820746 | RR-TB | lineage3 | None | ERR2514394 | Other | lineage4.3.4.2 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR2514565 | Other | lineage3.1.2.1 | gb | ERR2514652 | Other | lineage4.7 | gb | ERR4820801 | Other | lineage1.2.2 | None | ERR4820026 | Other | lineage3 | None | ERR4819980 | Other | lineage4.1.2.1 | None | ERR4820586 | Other | lineage3 | gb | ERR4819950 | RR-TB | lineage4.1.1.3 | gb | ERR2515007 | Other | lineage3 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046087 | Other | None | ERR4821127 | HR-TB | lineage4.6.2.2 | gb | ERR4820846 | RR-TB | lineage4.6.2.2 | gb | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR4821492 | HR-TB | lineage3 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6045557 | Sensitive | lineage4.1.2.1 | gb | ERR4822035 | Other | lineage4.8 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821154 | Other | lineage2.2.1 | gb | ERR4821167 | Other | lineage4.8 | gb | ERR4821906 | Other | lineage4.1.1 | None | ERR4822033 | Other | lineage3 | None | SRR6045591 | Other | lineage4.1.2.1 | None | ERR4822169 | Other | lineage4.1.1.3 | gb | ERR4822176 | Other | lineage4.1.1.2 | None | ERR4821746 | Other | lineage4.4.1.1 | gb | ERR4821761 | Other | lineage3 | gb | SRR6046113 | Other | lineage4.1.1.3 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045726 | Other | lineage3 | None | SRR6046210 | Other | lineage4 | None | SRR5818388 | Other | lineage4.9 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6045778 | Other | lineage3.1 | None | SRR6045769 | Sensitive | lineage4.8.2 | gb | SRR6044769 | Other | lineage1.1.2 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045876 | Other | lineage3 | gb | SRR6045790 | Other | lineage4.1.1.3.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR5818690 | Other | lineage4.2.2.2 | None | SRR6044787 | Other | lineage4.4 | None | SRR6044784 | MDR-TB | lineage3 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6044993 | Other | lineage3 | None | SRR6045952 | HR-TB | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR6046020 | Other | lineage3 | None | SRR6045178 | Other | lineage3 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6045295 | Other | lineage4.7 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6046376 | Other | lineage3 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046239 | Other | lineage4.9;lineage3 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046384 | Other | lineage4.3.1.1 | gb | ERR2851354 | RR-TB | lineage4.9 | None | ERR4829289 | Other | lineage4.1.2.1 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR4829333 | RR-TB | lineage4 | None | ERR4828962 | Other | lineage4.1.4 | it | SRR6046517 | Other | lineage4.8 | None | SRR6046442 | Other | lineage3 | None | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046482 | HR-TB | None | SRR6046497 | Other | lineage4.9 | None | SRR6046818 | Other | lineage4.2.1 | gb | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046790 | Other | lineage4.7 | None | SRR6046729 | Other | None | SRR6046802 | Other | lineage4 | None | SRR6046839 | Other | lineage4.9 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6824357 | Pre-XDR-TB | lineage4.4.2 | None | SRR6046864 | Other | lineage3 | gb | SRR6398010 | Sensitive | lineage4.2.1 | ca | SRR6397640 | Other | lineage4.2.1.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR7131004 | Other | lineage4.6.2.2 | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131068 | Other | lineage4.8 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131061 | Other | lineage2.2.1 | None | SRR7131109 | Pre-XDR-TB | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131198 | Other | lineage4.3.3 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131196 | Other | lineage4.8 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131233 | MDR-TB | lineage4.3.3 | None | SRR7131234 | Other | lineage4.9 | None | SRR7131236 | Other | lineage4.3.4.2 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR8600168 | Other | La1.8.1 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796582 | HR-TB | lineage4.3 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796590 | Other | lineage4.9 | None | ERR10796588 | Other | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796597 | Other | lineage4 | None | ERR10796592 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796615 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796635 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796627 | Other | lineage4 | None | ERR10796629 | Other | lineage4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796634 | Other | lineage4 | None | ERR11049448 | RR-TB | lineage4.5 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR11049395 | RR-TB | lineage4.5 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR4627369 | Other | La1.8.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769512 | Sensitive | lineage4.9 | None | ERR5908124 | Other | lineage4.8 | None | ERR4798167 | Sensitive | lineage4.5;lineage3.1.2 | in | ERR6197028 | Other | lineage4.9 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR6197030 | Other | lineage4.9 | None | ERR9117704 | Other | lineage4.6 | None | ERR6197032 | Other | lineage4.9 | None | ERR7821140 | Sensitive | lineage2.2.1.1 | None | ERR6197042 | RR-TB | lineage4.9 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR9117794 | Sensitive | lineage3 | None | ERR9117729 | Other | lineage3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9907760 | Pre-XDR-TB | lineage4.3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117841 | Other | lineage4.8.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119120 | Other | lineage4.8 | None | SRR10315715 | MDR-TB | lineage4.4.1.1.1 | None | SRR10315640 | MDR-TB | lineage4.8 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | SRR1173521 | HR-TB | lineage4.9 | None | SRR11349207 | RR-TB | lineage2.2.1 | None |
|---|
