EBG00000313339 - n.1037C>T
Drug resistance types
10 Sensitive
25 RR-TB
14 HR-TB
32 MDR-TB
18 Pre-XDR-TB
0 XDR-TB
122 Other
lineage Counts
| lineage | Count |
|---|---|
| 6 | |
| lineage2.2.1 | 52 |
| lineage4.9 | 22 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4 | 9 |
| lineage4.1.3 | 1 |
| lineage4.1.2.1 | 14 |
| lineage4.8 | 14 |
| lineage1.2.1.1 | 1 |
| lineage4.4.1.1 | 7 |
| lineage3.1 | 2 |
| lineage3 | 14 |
| lineage4.3.4.2 | 4 |
| lineage1.1.2 | 4 |
| lineage6.1.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2.2 | 2 |
| lineage3.1.3 | 2 |
| lineage4.2.2.2;lineage3 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.3.4.2.1 | 5 |
| lineage4.4 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage3.1.1 | 3 |
| lineage3.1.2.2 | 2 |
| lineage4.8.2 | 2 |
| lineage4.3.1.1 | 1 |
| lineage4.1.2 | 2 |
| lineage1.1.3.3 | 2 |
| lineage4.7 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.6.5 | 1 |
| lineage4.3.4.1 | 3 |
| lineage2.2.1.1 | 3 |
| La1.2.BCG | 2 |
| lineage4.3.3 | 4 |
| lineage4.3.2.1 | 1 |
| lineage2.2.2 | 5 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.3.4 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.3 | 1 |
| lineage4.3.2 | 1 |
| La1.6 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.5 | 2 |
| lineage4.2.2 | 1 |
| lineage4.4.2 | 2 |
| lineage4.6.2.2 | 1 |
| lineage6.1.1 | 1 |
| lineage1.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 221 |
Geographic prevalence
Country level data for this variant is available for 9 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675282 | Other | None | ERR1665405 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675227 | Other | lineage4.9 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675265 | Other | lineage4 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675565 | Other | lineage3 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817497 | Other | lineage1.1.2 | None | ERR2229489 | HR-TB | lineage4.8 | None | ERR4818904 | Other | lineage4.8 | None | SRR5067249 | Sensitive | lineage2.2.1 | vn | SRR5007172 | Sensitive | lineage4.1.2.1 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR2513762 | Sensitive | lineage3 | gb | SRR6045496 | Other | lineage6.1.3 | None | ERR4819720 | Other | lineage3.1.2.1 | gb | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR20969820 | HR-TB | lineage2.2 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6046210 | Other | lineage4 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR5818690 | Other | lineage4.2.2.2 | None | SRR6045778 | Other | lineage3.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045849 | Other | lineage4.4.1.1 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044787 | Other | lineage4.4 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044896 | Other | lineage4.8 | gb | SRR6044904 | Other | lineage3 | None | SRR6045022 | Other | lineage3.1.1 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6044993 | Other | lineage3 | None | SRR6045952 | HR-TB | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045986 | Other | lineage3 | None | SRR6046016 | Other | lineage4.3.1.1 | gb | SRR6045999 | Sensitive | lineage4.8.2 | gb | SRR6045384 | Other | lineage4.1.2 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6046020 | Other | lineage3 | None | SRR6045178 | Other | lineage3 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6046362 | HR-TB | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR2851354 | RR-TB | lineage4.9 | None | ERR4828327 | Other | lineage1.2.1.2.1 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046482 | HR-TB | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6046848 | Other | lineage4.6.5 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131032 | Other | lineage2.2.1 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR9596067 | Other | La1.2.BCG | None | DRR184629 | Other | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR1735641 | Sensitive | lineage2.2.1 | gb | SRR9971168 | Other | lineage4.3.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796629 | Other | lineage4 | None | ERR10796597 | Other | lineage4 | None | ERR10796592 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR4797974 | Other | lineage1.1.2 | in | ERR4811708 | HR-TB | lineage4 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR6197036 | Other | lineage4 | None | ERR9117781 | Other | lineage3.1.3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117805 | Other | lineage4.3.2 | None | SRR10315709 | MDR-TB | lineage2.2.1 | None | SRR10315476 | MDR-TB | lineage4.8 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140736 | RR-TB | None | SRR1173170 | Other | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173740 | Other | None | SRR11972215 | RR-TB | lineage4.5 | None | SRR1173770 | Other | lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR16058205 | HR-TB | lineage2.2.1 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR1735703 | Other | La1.2.BCG | gb | SRR18002926 | Other | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003036 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18911245 | Sensitive | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303805 | Other | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19304104 | Other | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR21658552 | Other | lineage6.1.1 | None | SRR21685247 | Sensitive | lineage2.2.1 | None | SRR21276954 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR21727888 | Other | lineage1.2.1.2 | None | SRR21728179 | Sensitive | lineage2.2.1 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None |
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